Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 ADK-205ENST00000539909 1866 ntTSL 2 BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 AC103702.1-201ENST00000548801 2630 ntBASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 OLA1P2-201ENST00000395519 1264 ntBASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 KRT18P33-201ENST00000398525 1043 ntBASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 AL590824.1-201ENST00000403828 1349 ntBASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 AL512288.1-201ENST00000448015 491 ntTSL 5 BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 PSME2P2-201ENST00000453033 700 ntBASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 SRP14-208ENST00000560773 468 ntTSL 3 BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 AC245369.7-201ENST00000631386 350 ntBASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 GNG14-201ENST00000640117 210 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 RN7SL684P-201ENST00000465665 294 ntBASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 AC093700.1-201ENST00000503348 717 ntBASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 AC080013.5-201ENST00000607044 679 ntBASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SHANK3Q9BYB0 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SHANK3Q9BYB0 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC18.08■□□□□ 0.49
SHANK3Q9BYB0 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SHANK3Q9BYB0 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC18.08■□□□□ 0.49
SHANK3Q9BYB0 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC18.08■□□□□ 0.49
SHANK3Q9BYB0 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
SHANK3Q9BYB0 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SHANK3Q9BYB0 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
SHANK3Q9BYB0 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SHANK3Q9BYB0 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 BPIFA4P-201ENST00000375465 1203 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 MIR1307-201ENST00000408840 149 ntBASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 GPX3-202ENST00000517973 612 ntTSL 3 BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 AC091304.3-201ENST00000566500 716 ntBASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 MIR6893-201ENST00000613458 69 ntBASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 OR2T8-202ENST00000641945 1226 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SHANK3Q9BYB0 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 FAHD2B-201ENST00000272610 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 CA2-201ENST00000285379 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms