Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 PCDH8P1-201ENST00000428983 2773 ntBASIC14.79□□□□□ -0.04
HLA-CQ95604 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-CQ95604 AC092295.1-201ENST00000446262 434 ntTSL 3 BASIC14.79□□□□□ -0.04
HLA-CQ95604 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.79□□□□□ -0.04
HLA-CQ95604 TPT1P6-201ENST00000458298 514 ntBASIC14.79□□□□□ -0.04
HLA-CQ95604 ALG1L7P-201ENST00000502317 768 ntBASIC14.79□□□□□ -0.04
HLA-CQ95604 LY6E-215ENST00000523847 427 ntTSL 3 BASIC14.79□□□□□ -0.04
HLA-CQ95604 AC004923.3-201ENST00000527532 355 ntBASIC14.79□□□□□ -0.04
HLA-CQ95604 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC14.79□□□□□ -0.04
HLA-CQ95604 AC084262.1-201ENST00000567818 751 ntBASIC14.79□□□□□ -0.04
HLA-CQ95604 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC14.79□□□□□ -0.04
HLA-CQ95604 MIR4746-201ENST00000579802 71 ntBASIC14.79□□□□□ -0.04
HLA-CQ95604 AL591424.3-201ENST00000614278 872 ntBASIC14.79□□□□□ -0.04
HLA-CQ95604 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC14.79□□□□□ -0.04
HLA-CQ95604 AC245369.7-201ENST00000631386 350 ntBASIC14.79□□□□□ -0.04
HLA-CQ95604 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
HLA-CQ95604 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
HLA-CQ95604 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-CQ95604 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-CQ95604 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-CQ95604 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-CQ95604 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.79□□□□□ -0.04
HLA-CQ95604 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-CQ95604 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-CQ95604 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
HLA-CQ95604 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.78□□□□□ -0.04
HLA-CQ95604 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-CQ95604 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-CQ95604 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.78□□□□□ -0.04
HLA-CQ95604 LINC00528-201ENST00000600723 2160 ntBASIC14.78□□□□□ -0.04
HLA-CQ95604 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-CQ95604 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-CQ95604 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
HLA-CQ95604 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
HLA-CQ95604 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
HLA-CQ95604 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-CQ95604 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC14.78□□□□□ -0.04
HLA-CQ95604 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
HLA-CQ95604 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-CQ95604 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-CQ95604 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-CQ95604 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC14.78□□□□□ -0.04
HLA-CQ95604 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-CQ95604 SLC35F2-201ENST00000375682 1076 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
HLA-CQ95604 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC14.78□□□□□ -0.04
HLA-CQ95604 AC073210.1-201ENST00000414799 232 ntBASIC14.78□□□□□ -0.04
HLA-CQ95604 AC231533.1-201ENST00000416061 925 ntTSL 3 BASIC14.78□□□□□ -0.04
HLA-CQ95604 HNRNPA1P25-201ENST00000422644 937 ntBASIC14.78□□□□□ -0.04
HLA-CQ95604 GTF2I-203ENST00000443166 979 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-CQ95604 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC14.78□□□□□ -0.04
HLA-CQ95604 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-CQ95604 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-CQ95604 AP000533.1-201ENST00000456143 1177 ntBASIC14.78□□□□□ -0.04
HLA-CQ95604 RN7SL672P-201ENST00000474091 317 ntBASIC14.78□□□□□ -0.04
HLA-CQ95604 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC14.78□□□□□ -0.04
HLA-CQ95604 AC108724.1-201ENST00000481669 352 ntBASIC14.78□□□□□ -0.04
HLA-CQ95604 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC14.78□□□□□ -0.04
HLA-CQ95604 AC011431.1-201ENST00000512971 230 ntBASIC14.78□□□□□ -0.04
HLA-CQ95604 AC124242.1-203ENST00000517747 817 ntTSL 3 BASIC14.78□□□□□ -0.04
HLA-CQ95604 MBP-230ENST00000528160 584 ntTSL 5 BASIC14.78□□□□□ -0.04
HLA-CQ95604 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC14.78□□□□□ -0.04
HLA-CQ95604 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
HLA-CQ95604 METTL23-207ENST00000588783 1184 ntTSL 5 BASIC14.78□□□□□ -0.04
HLA-CQ95604 AC135178.5-201ENST00000602597 674 ntBASIC14.78□□□□□ -0.04
HLA-CQ95604 AC006986.1-201ENST00000612764 241 ntBASIC14.78□□□□□ -0.04
HLA-CQ95604 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC14.78□□□□□ -0.04
HLA-CQ95604 AC022960.2-201ENST00000616300 666 ntBASIC14.78□□□□□ -0.04
HLA-CQ95604 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
HLA-CQ95604 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
HLA-CQ95604 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.78□□□□□ -0.04
HLA-CQ95604 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-CQ95604 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
HLA-CQ95604 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-CQ95604 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-CQ95604 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-CQ95604 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-CQ95604 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-CQ95604 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-CQ95604 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-CQ95604 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-CQ95604 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-CQ95604 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC14.78□□□□□ -0.04
HLA-CQ95604 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HLA-CQ95604 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
HLA-CQ95604 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HLA-CQ95604 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.04
HLA-CQ95604 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC14.77□□□□□ -0.04
HLA-CQ95604 AL391005.1-201ENST00000623953 2435 ntBASIC14.77□□□□□ -0.04
HLA-CQ95604 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.77□□□□□ -0.04
HLA-CQ95604 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HLA-CQ95604 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
HLA-CQ95604 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC14.77□□□□□ -0.04
HLA-CQ95604 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
HLA-CQ95604 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HLA-CQ95604 SHMT1P1-201ENST00000419974 1312 ntBASIC14.77□□□□□ -0.04
HLA-CQ95604 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
HLA-CQ95604 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HLA-CQ95604 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
HLA-CQ95604 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HLA-CQ95604 OR2W2P-201ENST00000406313 909 ntBASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms