Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 PIN1P1-201ENST00000412108 996 ntBASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 BAATP1-201ENST00000412284 1225 ntBASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 ARSEP1-201ENST00000420443 635 ntBASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 TSPY16P-201ENST00000449843 468 ntBASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 API5-211ENST00000534695 560 ntTSL 5 BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 PAM16-204ENST00000571941 674 ntTSL 3 BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 AC132938.4-201ENST00000623835 848 ntBASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 AL033527.5-201ENST00000641382 801 ntBASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 FKBP4P6-201ENST00000457486 1332 ntBASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 C5AR2-201ENST00000595464 6746 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 CCDC88C-204ENST00000389857 7474 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 AC073869.1-201ENST00000415574 2762 ntBASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 MAPK10-262ENST00000641051 5738 ntBASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 ANKRD52-201ENST00000267116 8688 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 ADGRD1-201ENST00000261654 5168 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 CICP17-201ENST00000418553 2377 ntBASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CCDC54Q8NEL0 USE1-206ENST00000595101 1776 ntTSL 2 BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 USP28-214ENST00000545540 3431 ntTSL 2 BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 TGM2-201ENST00000361475 5070 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 MIR770-201ENST00000390219 98 ntBASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 AL035414.1-201ENST00000451327 857 ntBASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 AC068587.3-201ENST00000526613 355 ntBASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 CDK4-206ENST00000549606 558 ntTSL 2 BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 AC004466.1-201ENST00000599515 1080 ntBASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 AC008825.2-201ENST00000603374 718 ntBASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 GPALPP1-207ENST00000611650 899 ntBASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 WFDC1-204ENST00000613603 549 ntBASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 GLI3-201ENST00000395925 8208 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 FOS-202ENST00000535987 1402 ntTSL 2 BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 AC009093.10-201ENST00000641956 1442 ntBASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 YIPF6-201ENST00000374622 6134 ntTSL 2 BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 CPLX2-201ENST00000359546 5023 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 STOX2-201ENST00000308497 10458 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CCDC54Q8NEL0 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms