Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SYNE4Q8N205 CICP24-201ENST00000605464 2705 ntBASIC17.86■□□□□ 0.45
SYNE4Q8N205 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SYNE4Q8N205 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC17.86■□□□□ 0.45
SYNE4Q8N205 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SYNE4Q8N205 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SYNE4Q8N205 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SYNE4Q8N205 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SYNE4Q8N205 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SYNE4Q8N205 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
SYNE4Q8N205 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SYNE4Q8N205 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
SYNE4Q8N205 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC17.86■□□□□ 0.45
SYNE4Q8N205 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC17.86■□□□□ 0.45
SYNE4Q8N205 AC022447.6-201ENST00000515522 438 ntBASIC17.86■□□□□ 0.45
SYNE4Q8N205 AC005740.1-201ENST00000515639 522 ntBASIC17.86■□□□□ 0.45
SYNE4Q8N205 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC17.86■□□□□ 0.45
SYNE4Q8N205 NDUFB10P1-201ENST00000567319 521 ntBASIC17.86■□□□□ 0.45
SYNE4Q8N205 RN7SL665P-201ENST00000578793 300 ntBASIC17.86■□□□□ 0.45
SYNE4Q8N205 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC17.86■□□□□ 0.45
SYNE4Q8N205 RN7SL596P-201ENST00000582123 288 ntBASIC17.86■□□□□ 0.45
SYNE4Q8N205 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC17.86■□□□□ 0.45
SYNE4Q8N205 AC046158.3-201ENST00000624947 2558 ntBASIC17.86■□□□□ 0.45
SYNE4Q8N205 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SYNE4Q8N205 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
SYNE4Q8N205 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SYNE4Q8N205 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
SYNE4Q8N205 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SYNE4Q8N205 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SYNE4Q8N205 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
SYNE4Q8N205 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
SYNE4Q8N205 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC17.86■□□□□ 0.45
SYNE4Q8N205 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
SYNE4Q8N205 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
SYNE4Q8N205 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.85■□□□□ 0.45
SYNE4Q8N205 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC17.85■□□□□ 0.45
SYNE4Q8N205 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE4Q8N205 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE4Q8N205 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE4Q8N205 AC007686.3-201ENST00000619017 3487 ntBASIC17.85■□□□□ 0.45
SYNE4Q8N205 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE4Q8N205 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE4Q8N205 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE4Q8N205 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE4Q8N205 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE4Q8N205 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE4Q8N205 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE4Q8N205 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE4Q8N205 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE4Q8N205 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE4Q8N205 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE4Q8N205 USP4-203ENST00000415188 1454 ntTSL 3 BASIC17.85■□□□□ 0.45
SYNE4Q8N205 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC17.85■□□□□ 0.45
SYNE4Q8N205 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC17.85■□□□□ 0.45
SYNE4Q8N205 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
SYNE4Q8N205 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE4Q8N205 RGS5-216ENST00000449680 788 ntTSL 3 BASIC17.85■□□□□ 0.45
SYNE4Q8N205 AC024293.1-201ENST00000467930 498 ntBASIC17.85■□□□□ 0.45
SYNE4Q8N205 RN7SL396P-201ENST00000471086 295 ntBASIC17.85■□□□□ 0.45
SYNE4Q8N205 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC17.85■□□□□ 0.45
SYNE4Q8N205 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC17.85■□□□□ 0.45
SYNE4Q8N205 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SYNE4Q8N205 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC17.85■□□□□ 0.45
SYNE4Q8N205 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC17.85■□□□□ 0.45
SYNE4Q8N205 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC17.85■□□□□ 0.45
SYNE4Q8N205 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE4Q8N205 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE4Q8N205 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE4Q8N205 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE4Q8N205 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE4Q8N205 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
SYNE4Q8N205 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC17.85■□□□□ 0.45
SYNE4Q8N205 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
SYNE4Q8N205 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC17.85■□□□□ 0.45
SYNE4Q8N205 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SYNE4Q8N205 AC012617.1-204ENST00000586340 2305 ntBASIC17.84■□□□□ 0.45
SYNE4Q8N205 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC17.84■□□□□ 0.45
SYNE4Q8N205 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SYNE4Q8N205 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE4Q8N205 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SYNE4Q8N205 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC17.84■□□□□ 0.45
SYNE4Q8N205 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC17.84■□□□□ 0.45
SYNE4Q8N205 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
SYNE4Q8N205 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE4Q8N205 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE4Q8N205 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE4Q8N205 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
SYNE4Q8N205 PYY2-201ENST00000315776 282 ntBASIC17.84■□□□□ 0.45
SYNE4Q8N205 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SYNE4Q8N205 BAX-205ENST00000391871 687 ntTSL 5 BASIC17.84■□□□□ 0.45
SYNE4Q8N205 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC17.84■□□□□ 0.45
SYNE4Q8N205 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC17.84■□□□□ 0.45
SYNE4Q8N205 BCAS2P2-201ENST00000425064 674 ntBASIC17.84■□□□□ 0.45
SYNE4Q8N205 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC17.84■□□□□ 0.45
SYNE4Q8N205 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC17.84■□□□□ 0.45
SYNE4Q8N205 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC17.84■□□□□ 0.45
SYNE4Q8N205 AGPAT5P1-201ENST00000455855 1019 ntBASIC17.84■□□□□ 0.45
SYNE4Q8N205 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC17.84■□□□□ 0.45
SYNE4Q8N205 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SYNE4Q8N205 AREG-202ENST00000502307 956 ntTSL 5 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms