Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RFWD3Q6PCD5 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RFWD3Q6PCD5 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.21■□□□□ 0.03
RFWD3Q6PCD5 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
RFWD3Q6PCD5 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
RFWD3Q6PCD5 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC15.21■□□□□ 0.03
RFWD3Q6PCD5 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
RFWD3Q6PCD5 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
RFWD3Q6PCD5 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC15.21■□□□□ 0.02
RFWD3Q6PCD5 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
RFWD3Q6PCD5 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
RFWD3Q6PCD5 F10-203ENST00000409306 1450 ntTSL 3 BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 MYO15B-237ENST00000642007 4893 ntBASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 FNTAP2-201ENST00000430308 634 ntBASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 TUBB8P8-201ENST00000458717 1058 ntBASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 RPL18P13-201ENST00000478088 569 ntBASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 AC091804.1-201ENST00000486888 567 ntBASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 AC103810.3-201ENST00000583567 96 ntBASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 AC005962.1-201ENST00000584100 773 ntBASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFWD3Q6PCD5 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 AL008718.2-201ENST00000609206 1313 ntBASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 ARTN-209ENST00000479128 471 ntTSL 3 BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 AC005740.2-201ENST00000511085 419 ntBASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 AC005324.6-201ENST00000587972 613 ntBASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 AC020914.3-201ENST00000594712 304 ntBASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 AC244452.3-201ENST00000636814 210 ntBASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 MVK-217ENST00000639206 367 ntTSL 5 BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 Z98259.2-201ENST00000641583 609 ntBASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 AC004923.1-202ENST00000642106 209 ntBASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC15.19■□□□□ 0.02
RFWD3Q6PCD5 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms