Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 DGCR9-201ENST00000609630 2415 ntBASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 PKD1P5-201ENST00000532415 10291 ntBASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 MIR33B-201ENST00000385104 96 ntBASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 EEF1DP6-201ENST00000449232 372 ntBASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 AC125604.1-201ENST00000496255 707 ntBASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 SPCS2P2-201ENST00000603270 608 ntBASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 AL136295.7-201ENST00000619226 1200 ntBASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 COL6A4P2-202ENST00000504443 2753 ntBASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC144BQ3MJ40 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
CCDC144BQ3MJ40 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
CCDC144BQ3MJ40 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC16.89■□□□□ 0.3
CCDC144BQ3MJ40 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
CCDC144BQ3MJ40 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 AK6-201ENST00000380818 1183 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 AC010141.1-201ENST00000411585 623 ntBASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 AC007274.2-201ENST00000421675 662 ntBASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 RPL18P13-201ENST00000478088 569 ntBASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 NAT9-224ENST00000583757 583 ntTSL 3 BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 AC099521.3-201ENST00000624251 2938 ntBASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC144BQ3MJ40 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC144BQ3MJ40 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC144BQ3MJ40 AC023090.2-201ENST00000625182 2110 ntBASIC16.88■□□□□ 0.29
CCDC144BQ3MJ40 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC144BQ3MJ40 AL157791.1-201ENST00000553667 1699 ntBASIC16.88■□□□□ 0.29
CCDC144BQ3MJ40 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC144BQ3MJ40 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC144BQ3MJ40 USP4-203ENST00000415188 1454 ntTSL 3 BASIC16.88■□□□□ 0.29
CCDC144BQ3MJ40 AC012508.2-201ENST00000567613 1472 ntBASIC16.88■□□□□ 0.29
CCDC144BQ3MJ40 AL359881.3-201ENST00000602640 1721 ntBASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms