Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHROOM1Q2M3G4 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SHROOM1Q2M3G4 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHROOM1Q2M3G4 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHROOM1Q2M3G4 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SHROOM1Q2M3G4 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHROOM1Q2M3G4 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SHROOM1Q2M3G4 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHROOM1Q2M3G4 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHROOM1Q2M3G4 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 AC090502.4-201ENST00000551714 1386 ntBASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 AL357563.1-201ENST00000404728 395 ntBASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 AL512306.1-201ENST00000432698 848 ntBASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 AC004837.1-201ENST00000446267 564 ntBASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 LYPLA2P1-203ENST00000447689 696 ntBASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 RNA5SP417-201ENST00000516459 108 ntBASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 HERC2P11-201ENST00000562845 725 ntBASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 AC100756.2-201ENST00000569537 736 ntBASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 AL021707.6-201ENST00000609212 491 ntBASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC16.78■□□□□ 0.28
SHROOM1Q2M3G4 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 AC106881.1-201ENST00000605849 3329 ntBASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 AC025271.4-201ENST00000621477 1726 ntBASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 USP28-214ENST00000545540 3431 ntTSL 2 BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 RN7SKP109-201ENST00000410592 316 ntBASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 AL354861.1-201ENST00000445213 355 ntBASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 AC023824.1-201ENST00000562945 2975 ntBASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 LINC02228-204ENST00000642115 2962 ntBASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.77■□□□□ 0.28
SHROOM1Q2M3G4 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms