Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CX3CL1P78423 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC11.81□□□□□ -0.52
CX3CL1P78423 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CX3CL1P78423 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CX3CL1P78423 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CX3CL1P78423 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CX3CL1P78423 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC11.8□□□□□ -0.52
CX3CL1P78423 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
CX3CL1P78423 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC11.8□□□□□ -0.52
CX3CL1P78423 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
CX3CL1P78423 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC11.8□□□□□ -0.52
CX3CL1P78423 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC11.8□□□□□ -0.52
CX3CL1P78423 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC11.8□□□□□ -0.52
CX3CL1P78423 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC11.8□□□□□ -0.52
CX3CL1P78423 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC11.8□□□□□ -0.52
CX3CL1P78423 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC11.8□□□□□ -0.52
CX3CL1P78423 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 USB1-202ENST00000423271 1217 ntTSL 2 BASIC11.8□□□□□ -0.52
CX3CL1P78423 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
CX3CL1P78423 U91328.1-201ENST00000437528 223 ntBASIC11.8□□□□□ -0.52
CX3CL1P78423 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
CX3CL1P78423 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC11.8□□□□□ -0.52
CX3CL1P78423 KLF2P4-201ENST00000451959 1225 ntBASIC11.8□□□□□ -0.52
CX3CL1P78423 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
CX3CL1P78423 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC11.8□□□□□ -0.52
CX3CL1P78423 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
CX3CL1P78423 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC11.8□□□□□ -0.52
CX3CL1P78423 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC11.8□□□□□ -0.52
CX3CL1P78423 VPS18-202ENST00000558474 873 ntTSL 3 BASIC11.8□□□□□ -0.52
CX3CL1P78423 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC11.8□□□□□ -0.52
CX3CL1P78423 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC11.8□□□□□ -0.52
CX3CL1P78423 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC11.8□□□□□ -0.52
CX3CL1P78423 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
CX3CL1P78423 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC11.8□□□□□ -0.52
CX3CL1P78423 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC11.8□□□□□ -0.52
CX3CL1P78423 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC11.8□□□□□ -0.52
CX3CL1P78423 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
CX3CL1P78423 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 AHCYP2-201ENST00000430630 1300 ntBASIC11.8□□□□□ -0.52
CX3CL1P78423 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC11.8□□□□□ -0.52
CX3CL1P78423 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
CX3CL1P78423 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CX3CL1P78423 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC11.79□□□□□ -0.52
CX3CL1P78423 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC11.79□□□□□ -0.52
CX3CL1P78423 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC11.79□□□□□ -0.52
CX3CL1P78423 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
CX3CL1P78423 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC11.79□□□□□ -0.52
CX3CL1P78423 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
CX3CL1P78423 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
CX3CL1P78423 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC11.79□□□□□ -0.52
CX3CL1P78423 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 AP001267.2-201ENST00000532619 2086 ntBASIC11.79□□□□□ -0.52
CX3CL1P78423 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC11.79□□□□□ -0.52
CX3CL1P78423 SLC6A6P1-201ENST00000413933 1850 ntBASIC11.79□□□□□ -0.52
CX3CL1P78423 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC11.79□□□□□ -0.52
CX3CL1P78423 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC11.79□□□□□ -0.52
CX3CL1P78423 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
CX3CL1P78423 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC11.79□□□□□ -0.52
CX3CL1P78423 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
CX3CL1P78423 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms