Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 INTS4P2-202ENST00000614726 2019 ntBASIC16.4■□□□□ 0.22
TPM4P67936 CACNA1G-229ENST00000514181 6795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TPM4P67936 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TPM4P67936 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TPM4P67936 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC16.39■□□□□ 0.22
TPM4P67936 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC16.39■□□□□ 0.21
TPM4P67936 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM4P67936 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM4P67936 NIN-206ENST00000453196 6785 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
TPM4P67936 CAPN5-201ENST00000278559 4397 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM4P67936 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
TPM4P67936 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC16.39■□□□□ 0.21
TPM4P67936 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM4P67936 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TPM4P67936 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.39■□□□□ 0.21
TPM4P67936 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC16.39■□□□□ 0.21
TPM4P67936 GALNT16-201ENST00000337827 5708 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM4P67936 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM4P67936 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM4P67936 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM4P67936 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM4P67936 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM4P67936 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.39■□□□□ 0.21
TPM4P67936 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM4P67936 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM4P67936 AC097493.3-201ENST00000509725 367 ntBASIC16.39■□□□□ 0.21
TPM4P67936 IGHV3-42-201ENST00000520410 361 ntBASIC16.39■□□□□ 0.21
TPM4P67936 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.39■□□□□ 0.21
TPM4P67936 SORD2P-201ENST00000558556 1069 ntBASIC16.39■□□□□ 0.21
TPM4P67936 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.39■□□□□ 0.21
TPM4P67936 AC015911.4-201ENST00000588022 1070 ntBASIC16.39■□□□□ 0.21
TPM4P67936 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.39■□□□□ 0.21
TPM4P67936 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.39■□□□□ 0.21
TPM4P67936 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TPM4P67936 AL671883.3-201ENST00000603274 991 ntBASIC16.39■□□□□ 0.21
TPM4P67936 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.39■□□□□ 0.21
TPM4P67936 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM4P67936 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC16.39■□□□□ 0.21
TPM4P67936 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TPM4P67936 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
TPM4P67936 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC16.39■□□□□ 0.21
TPM4P67936 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM4P67936 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.39■□□□□ 0.21
TPM4P67936 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TPM4P67936 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM4P67936 TNC-212ENST00000542877 5517 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TPM4P67936 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TPM4P67936 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TPM4P67936 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TPM4P67936 AMER3-202ENST00000423981 6172 ntAPPRIS P1 TSL 4 BASIC16.39■□□□□ 0.21
TPM4P67936 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC16.39■□□□□ 0.21
TPM4P67936 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
TPM4P67936 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
TPM4P67936 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
TPM4P67936 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC16.38■□□□□ 0.21
TPM4P67936 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TPM4P67936 Z82170.1-201ENST00000625081 3192 ntBASIC16.38■□□□□ 0.21
TPM4P67936 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM4P67936 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC16.38■□□□□ 0.21
TPM4P67936 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TPM4P67936 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM4P67936 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM4P67936 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TPM4P67936 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
TPM4P67936 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM4P67936 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC16.38■□□□□ 0.21
TPM4P67936 KLF2P2-201ENST00000416807 1039 ntBASIC16.38■□□□□ 0.21
TPM4P67936 TREML5P-201ENST00000421694 576 ntBASIC16.38■□□□□ 0.21
TPM4P67936 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.38■□□□□ 0.21
TPM4P67936 AC009477.1-201ENST00000452936 217 ntBASIC16.38■□□□□ 0.21
TPM4P67936 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.38■□□□□ 0.21
TPM4P67936 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC16.38■□□□□ 0.21
TPM4P67936 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.38■□□□□ 0.21
TPM4P67936 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC16.38■□□□□ 0.21
TPM4P67936 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TPM4P67936 AC120045.2-201ENST00000567334 178 ntBASIC16.38■□□□□ 0.21
TPM4P67936 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC16.38■□□□□ 0.21
TPM4P67936 AL390955.2-201ENST00000603032 514 ntBASIC16.38■□□□□ 0.21
TPM4P67936 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.38■□□□□ 0.21
TPM4P67936 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM4P67936 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TPM4P67936 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM4P67936 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
TPM4P67936 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TPM4P67936 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM4P67936 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM4P67936 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
TPM4P67936 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
TPM4P67936 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC16.38■□□□□ 0.21
TPM4P67936 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM4P67936 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC16.38■□□□□ 0.21
TPM4P67936 MIR497HG-202ENST00000572453 3838 ntBASIC16.38■□□□□ 0.21
TPM4P67936 ANKRD36-204ENST00000461153 6102 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
TPM4P67936 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TPM4P67936 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
TPM4P67936 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.38■□□□□ 0.21
TPM4P67936 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TPM4P67936 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC16.38■□□□□ 0.21
TPM4P67936 GATAD2A-203ENST00000404158 5776 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
TPM4P67936 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms