Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TMEM14DP-201ENST00000422205 345 ntBASIC14.09□□□□□ -0.15
FOXA1P55317 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC14.09□□□□□ -0.15
FOXA1P55317 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA1P55317 FTH1P14-201ENST00000482930 551 ntBASIC14.09□□□□□ -0.15
FOXA1P55317 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.09□□□□□ -0.15
FOXA1P55317 CDC23-208ENST00000505120 455 ntTSL 3 BASIC14.09□□□□□ -0.15
FOXA1P55317 SLC25A47P1-201ENST00000531577 414 ntBASIC14.09□□□□□ -0.15
FOXA1P55317 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA1P55317 AC078819.1-201ENST00000547454 765 ntBASIC14.09□□□□□ -0.15
FOXA1P55317 AC012085.1-201ENST00000548270 765 ntBASIC14.09□□□□□ -0.15
FOXA1P55317 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC14.09□□□□□ -0.15
FOXA1P55317 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC14.09□□□□□ -0.15
FOXA1P55317 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.09□□□□□ -0.15
FOXA1P55317 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.09□□□□□ -0.15
FOXA1P55317 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.09□□□□□ -0.15
FOXA1P55317 AL358472.3-201ENST00000608147 415 ntBASIC14.09□□□□□ -0.15
FOXA1P55317 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC14.09□□□□□ -0.15
FOXA1P55317 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
FOXA1P55317 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC14.09□□□□□ -0.15
FOXA1P55317 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA1P55317 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.09□□□□□ -0.15
FOXA1P55317 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC14.09□□□□□ -0.15
FOXA1P55317 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
FOXA1P55317 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA1P55317 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA1P55317 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA1P55317 AC005014.1-201ENST00000432006 2976 ntBASIC14.09□□□□□ -0.15
FOXA1P55317 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA1P55317 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA1P55317 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC14.09□□□□□ -0.15
FOXA1P55317 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA1P55317 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
FOXA1P55317 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC14.09□□□□□ -0.15
FOXA1P55317 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC14.09□□□□□ -0.15
FOXA1P55317 DGCR9-201ENST00000609630 2415 ntBASIC14.09□□□□□ -0.15
FOXA1P55317 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
FOXA1P55317 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC14.09□□□□□ -0.15
FOXA1P55317 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA1P55317 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC14.09□□□□□ -0.15
FOXA1P55317 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
FOXA1P55317 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
FOXA1P55317 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
FOXA1P55317 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
FOXA1P55317 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA1P55317 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC14.08□□□□□ -0.16
FOXA1P55317 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA1P55317 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC14.08□□□□□ -0.16
FOXA1P55317 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA1P55317 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
FOXA1P55317 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC14.08□□□□□ -0.16
FOXA1P55317 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
FOXA1P55317 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA1P55317 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC14.08□□□□□ -0.16
FOXA1P55317 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA1P55317 PTPA-215ENST00000432124 567 ntTSL 4 BASIC14.08□□□□□ -0.16
FOXA1P55317 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC14.08□□□□□ -0.16
FOXA1P55317 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC14.08□□□□□ -0.16
FOXA1P55317 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC14.08□□□□□ -0.16
FOXA1P55317 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
FOXA1P55317 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
FOXA1P55317 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
FOXA1P55317 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC14.08□□□□□ -0.16
FOXA1P55317 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
FOXA1P55317 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA1P55317 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC14.08□□□□□ -0.16
FOXA1P55317 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA1P55317 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.08□□□□□ -0.16
FOXA1P55317 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC14.08□□□□□ -0.16
FOXA1P55317 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA1P55317 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA1P55317 GALC-206ENST00000544807 2528 ntTSL 2 BASIC14.08□□□□□ -0.16
FOXA1P55317 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
FOXA1P55317 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA1P55317 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA1P55317 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA1P55317 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
FOXA1P55317 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA1P55317 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA1P55317 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXA1P55317 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXA1P55317 AC020658.7-201ENST00000624274 2442 ntBASIC14.07□□□□□ -0.16
FOXA1P55317 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA1P55317 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA1P55317 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC14.07□□□□□ -0.16
FOXA1P55317 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA1P55317 TCAF1P1-201ENST00000414990 2232 ntBASIC14.07□□□□□ -0.16
FOXA1P55317 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA1P55317 COL6A4P2-202ENST00000504443 2753 ntBASIC14.07□□□□□ -0.16
FOXA1P55317 CICP20-201ENST00000443330 2801 ntBASIC14.07□□□□□ -0.16
FOXA1P55317 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA1P55317 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXA1P55317 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXA1P55317 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA1P55317 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXA1P55317 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA1P55317 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXA1P55317 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA1P55317 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXA1P55317 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA1P55317 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms