Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC14.28□□□□□ -0.12
CDH13P55290 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC14.28□□□□□ -0.12
CDH13P55290 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
CDH13P55290 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CDH13P55290 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CDH13P55290 APP-205ENST00000358918 2366 ntTSL 5 BASIC14.28□□□□□ -0.12
CDH13P55290 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC14.28□□□□□ -0.12
CDH13P55290 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.28□□□□□ -0.12
CDH13P55290 AL590640.2-201ENST00000457038 527 ntBASIC14.28□□□□□ -0.12
CDH13P55290 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CDH13P55290 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC14.28□□□□□ -0.12
CDH13P55290 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.28□□□□□ -0.12
CDH13P55290 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
CDH13P55290 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
CDH13P55290 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CDH13P55290 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
CDH13P55290 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
CDH13P55290 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
CDH13P55290 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
CDH13P55290 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CDH13P55290 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
CDH13P55290 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.27□□□□□ -0.12
CDH13P55290 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CDH13P55290 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
CDH13P55290 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CDH13P55290 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
CDH13P55290 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CDH13P55290 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC14.27□□□□□ -0.12
CDH13P55290 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CDH13P55290 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
CDH13P55290 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC14.27□□□□□ -0.12
CDH13P55290 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC14.27□□□□□ -0.12
CDH13P55290 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
CDH13P55290 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CDH13P55290 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
CDH13P55290 MEX3B-202ENST00000558133 4333 ntBASIC14.27□□□□□ -0.12
CDH13P55290 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
CDH13P55290 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC14.27□□□□□ -0.12
CDH13P55290 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CDH13P55290 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDH13P55290 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDH13P55290 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
CDH13P55290 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CDH13P55290 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDH13P55290 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CDH13P55290 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CDH13P55290 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDH13P55290 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDH13P55290 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC14.27□□□□□ -0.13
CDH13P55290 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC14.27□□□□□ -0.13
CDH13P55290 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.27□□□□□ -0.13
CDH13P55290 AP003171.2-201ENST00000528208 925 ntBASIC14.27□□□□□ -0.13
CDH13P55290 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CDH13P55290 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
CDH13P55290 AC025279.2-201ENST00000569730 653 ntBASIC14.27□□□□□ -0.13
CDH13P55290 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.27□□□□□ -0.13
CDH13P55290 AC132938.4-201ENST00000623835 848 ntBASIC14.27□□□□□ -0.13
CDH13P55290 MVK-217ENST00000639206 367 ntTSL 5 BASIC14.27□□□□□ -0.13
CDH13P55290 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
CDH13P55290 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC14.27□□□□□ -0.13
CDH13P55290 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
CDH13P55290 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDH13P55290 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDH13P55290 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CDH13P55290 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDH13P55290 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDH13P55290 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDH13P55290 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDH13P55290 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CDH13P55290 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDH13P55290 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CDH13P55290 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
CDH13P55290 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms