Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PDX1P52945 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDX1P52945 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDX1P52945 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDX1P52945 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.16□□□□□ -0.14
PDX1P52945 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.16□□□□□ -0.14
PDX1P52945 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDX1P52945 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDX1P52945 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDX1P52945 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.15□□□□□ -0.14
PDX1P52945 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.15□□□□□ -0.14
PDX1P52945 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
PDX1P52945 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC14.15□□□□□ -0.14
PDX1P52945 AL009178.2-201ENST00000597278 2719 ntBASIC14.15□□□□□ -0.14
PDX1P52945 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
PDX1P52945 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
PDX1P52945 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
PDX1P52945 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.15□□□□□ -0.14
PDX1P52945 CYP4F23P-201ENST00000593402 1579 ntBASIC14.15□□□□□ -0.14
PDX1P52945 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC14.15□□□□□ -0.14
PDX1P52945 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 LBH-202ENST00000401506 485 ntTSL 3 BASIC14.15□□□□□ -0.14
PDX1P52945 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC14.15□□□□□ -0.14
PDX1P52945 GCOM2-201ENST00000509133 1104 ntBASIC14.15□□□□□ -0.14
PDX1P52945 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC14.15□□□□□ -0.14
PDX1P52945 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC14.15□□□□□ -0.14
PDX1P52945 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
PDX1P52945 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC14.15□□□□□ -0.14
PDX1P52945 NEU3-205ENST00000531619 582 ntTSL 5 BASIC14.15□□□□□ -0.14
PDX1P52945 AC131206.1-201ENST00000538078 1211 ntBASIC14.15□□□□□ -0.14
PDX1P52945 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC14.15□□□□□ -0.14
PDX1P52945 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
PDX1P52945 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC14.15□□□□□ -0.14
PDX1P52945 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC14.15□□□□□ -0.14
PDX1P52945 AC007718.1-201ENST00000621078 280 ntBASIC14.15□□□□□ -0.14
PDX1P52945 YRDCP1-201ENST00000621419 643 ntBASIC14.15□□□□□ -0.14
PDX1P52945 AL805961.1-201ENST00000642026 753 ntBASIC14.15□□□□□ -0.14
PDX1P52945 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
PDX1P52945 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
PDX1P52945 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.15□□□□□ -0.14
PDX1P52945 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
PDX1P52945 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
PDX1P52945 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.15□□□□□ -0.14
PDX1P52945 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC14.15□□□□□ -0.14
PDX1P52945 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
PDX1P52945 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDX1P52945 MTHFR-210ENST00000641407 2387 ntBASIC14.15□□□□□ -0.14
PDX1P52945 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.15
PDX1P52945 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC14.15□□□□□ -0.15
PDX1P52945 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDX1P52945 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDX1P52945 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDX1P52945 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PDX1P52945 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDX1P52945 AL136379.1-201ENST00000623471 2642 ntBASIC14.14□□□□□ -0.15
PDX1P52945 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
PDX1P52945 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDX1P52945 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDX1P52945 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14.14□□□□□ -0.15
PDX1P52945 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDX1P52945 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
PDX1P52945 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PDX1P52945 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC14.14□□□□□ -0.15
PDX1P52945 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDX1P52945 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PDX1P52945 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
PDX1P52945 CCNC-217ENST00000523985 958 ntTSL 2 BASIC14.14□□□□□ -0.15
PDX1P52945 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC14.14□□□□□ -0.15
PDX1P52945 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.14□□□□□ -0.15
PDX1P52945 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC14.14□□□□□ -0.15
PDX1P52945 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC14.14□□□□□ -0.15
PDX1P52945 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC14.14□□□□□ -0.15
PDX1P52945 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDX1P52945 AL109837.1-201ENST00000603272 613 ntBASIC14.14□□□□□ -0.15
PDX1P52945 BX088702.1-201ENST00000610784 235 ntBASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms