Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SCN4AP35499 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SCN4AP35499 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
SCN4AP35499 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SCN4AP35499 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SCN4AP35499 MX1-218ENST00000619682 1980 ntTSL 5 BASIC16.57■□□□□ 0.24
SCN4AP35499 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
SCN4AP35499 HTR7P1-202ENST00000624664 4411 ntBASIC16.57■□□□□ 0.24
SCN4AP35499 RPL4P6-201ENST00000438116 1304 ntBASIC16.56■□□□□ 0.24
SCN4AP35499 THAP4-203ENST00000402545 833 ntTSL 5 BASIC16.56■□□□□ 0.24
SCN4AP35499 AC013436.1-201ENST00000425077 422 ntTSL 3 BASIC16.56■□□□□ 0.24
SCN4AP35499 AL357033.2-201ENST00000430184 739 ntTSL 3 BASIC16.56■□□□□ 0.24
SCN4AP35499 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SCN4AP35499 GOLT1B-206ENST00000542038 933 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SCN4AP35499 DTWD1-205ENST00000558653 1131 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
SCN4AP35499 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC16.56■□□□□ 0.24
SCN4AP35499 AC137936.2-202ENST00000638124 1146 ntTSL 5 BASIC16.56■□□□□ 0.24
SCN4AP35499 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
SCN4AP35499 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SCN4AP35499 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SCN4AP35499 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SCN4AP35499 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
SCN4AP35499 USP39-220ENST00000613444 2161 ntTSL 2 BASIC16.56■□□□□ 0.24
SCN4AP35499 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC16.56■□□□□ 0.24
SCN4AP35499 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SCN4AP35499 AC079328.2-201ENST00000561241 3354 ntBASIC16.56■□□□□ 0.24
SCN4AP35499 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SCN4AP35499 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SCN4AP35499 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SCN4AP35499 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SCN4AP35499 EDEM2-201ENST00000374491 1756 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SCN4AP35499 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SCN4AP35499 SPAG1-205ENST00000520508 1796 ntTSL 5 BASIC16.56■□□□□ 0.24
SCN4AP35499 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC16.56■□□□□ 0.24
SCN4AP35499 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SCN4AP35499 UCP2-202ENST00000536983 1413 ntTSL 5 BASIC16.56■□□□□ 0.24
SCN4AP35499 AC136621.1-201ENST00000624017 2304 ntBASIC16.56■□□□□ 0.24
SCN4AP35499 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC16.56■□□□□ 0.24
SCN4AP35499 OR7E12P-201ENST00000344740 973 ntBASIC16.56■□□□□ 0.24
SCN4AP35499 CYP4F29P-202ENST00000428301 1279 ntTSL 2 BASIC16.56■□□□□ 0.24
SCN4AP35499 OR4C14P-201ENST00000440929 923 ntBASIC16.56■□□□□ 0.24
SCN4AP35499 IQSEC2-205ENST00000498281 673 ntTSL 3 BASIC16.56■□□□□ 0.24
SCN4AP35499 AC008750.2-201ENST00000526996 627 ntTSL 3 BASIC16.56■□□□□ 0.24
SCN4AP35499 IMMP1L-213ENST00000533642 314 ntTSL 2 BASIC16.56■□□□□ 0.24
SCN4AP35499 AC023051.2-201ENST00000541141 460 ntBASIC16.56■□□□□ 0.24
SCN4AP35499 AC140912.1-202ENST00000561802 194 ntTSL 3 BASIC16.56■□□□□ 0.24
SCN4AP35499 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
SCN4AP35499 ECSIT-211ENST00000592312 1286 ntTSL 5 BASIC16.56■□□□□ 0.24
SCN4AP35499 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC16.56■□□□□ 0.24
SCN4AP35499 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SCN4AP35499 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
SCN4AP35499 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SCN4AP35499 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SCN4AP35499 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC16.56■□□□□ 0.24
SCN4AP35499 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SCN4AP35499 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SCN4AP35499 AC105917.1-201ENST00000506637 2539 ntBASIC16.56■□□□□ 0.24
SCN4AP35499 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
SCN4AP35499 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
SCN4AP35499 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SCN4AP35499 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC16.55■□□□□ 0.24
SCN4AP35499 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC16.55■□□□□ 0.24
SCN4AP35499 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
SCN4AP35499 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SCN4AP35499 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.55■□□□□ 0.24
SCN4AP35499 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC16.55■□□□□ 0.24
SCN4AP35499 LYPLA1-202ENST00000343231 1308 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SCN4AP35499 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SCN4AP35499 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SCN4AP35499 HSD3BP1-201ENST00000286193 1111 ntBASIC16.55■□□□□ 0.24
SCN4AP35499 KRTAP1-5-201ENST00000361883 1177 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
SCN4AP35499 EEF1AKMT3-203ENST00000548256 561 ntTSL 4 BASIC16.55■□□□□ 0.24
SCN4AP35499 DLX6-203ENST00000555308 666 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
SCN4AP35499 AC090282.1-201ENST00000572821 534 ntTSL 3 BASIC16.55■□□□□ 0.24
SCN4AP35499 SMIM28-201ENST00000573100 855 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
SCN4AP35499 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC16.55■□□□□ 0.24
SCN4AP35499 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SCN4AP35499 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
SCN4AP35499 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SCN4AP35499 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
SCN4AP35499 NAAA-203ENST00000505594 1425 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
SCN4AP35499 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SCN4AP35499 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
SCN4AP35499 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SCN4AP35499 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SCN4AP35499 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC16.54■□□□□ 0.24
SCN4AP35499 AL031590.1-202ENST00000641466 1737 ntBASIC16.54■□□□□ 0.24
SCN4AP35499 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SCN4AP35499 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SCN4AP35499 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.54■□□□□ 0.24
SCN4AP35499 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SCN4AP35499 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
SCN4AP35499 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
SCN4AP35499 ARR3-201ENST00000307959 1292 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SCN4AP35499 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC16.54■□□□□ 0.24
SCN4AP35499 SNORD88B-201ENST00000408454 91 ntBASIC16.54■□□□□ 0.24
SCN4AP35499 AL359458.1-201ENST00000430821 400 ntTSL 3 BASIC16.54■□□□□ 0.24
SCN4AP35499 AC073896.3-201ENST00000546789 437 ntTSL 5 BASIC16.54■□□□□ 0.24
SCN4AP35499 AL590094.1-208ENST00000636917 627 ntTSL 5 BASIC16.54■□□□□ 0.24
SCN4AP35499 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms