Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A2P12110 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
COL6A2P12110 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC14.42□□□□□ -0.1
COL6A2P12110 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A2P12110 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC14.42□□□□□ -0.1
COL6A2P12110 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC14.42□□□□□ -0.1
COL6A2P12110 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A2P12110 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A2P12110 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A2P12110 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC14.42□□□□□ -0.1
COL6A2P12110 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC14.42□□□□□ -0.1
COL6A2P12110 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
COL6A2P12110 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A2P12110 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
COL6A2P12110 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.41□□□□□ -0.1
COL6A2P12110 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC14.41□□□□□ -0.1
COL6A2P12110 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.41□□□□□ -0.1
COL6A2P12110 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC14.41□□□□□ -0.1
COL6A2P12110 GAS5-209ENST00000430245 723 ntTSL 3 BASIC14.41□□□□□ -0.1
COL6A2P12110 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC14.41□□□□□ -0.1
COL6A2P12110 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
COL6A2P12110 TDH-203ENST00000531764 1110 ntBASIC14.41□□□□□ -0.1
COL6A2P12110 AC025279.2-201ENST00000569730 653 ntBASIC14.41□□□□□ -0.1
COL6A2P12110 TP53TG3HP-202ENST00000569755 579 ntBASIC14.41□□□□□ -0.1
COL6A2P12110 BAP1-211ENST00000615113 489 ntBASIC14.41□□□□□ -0.1
COL6A2P12110 AC002472.3-201ENST00000640124 621 ntBASIC14.41□□□□□ -0.1
COL6A2P12110 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 FAM90A12P-201ENST00000519497 2375 ntBASIC14.41□□□□□ -0.1
COL6A2P12110 FAM90A24P-201ENST00000520792 2369 ntBASIC14.41□□□□□ -0.1
COL6A2P12110 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.41□□□□□ -0.1
COL6A2P12110 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC14.41□□□□□ -0.1
COL6A2P12110 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
COL6A2P12110 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A2P12110 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.41□□□□□ -0.1
COL6A2P12110 AC087386.2-201ENST00000623212 4637 ntBASIC14.4□□□□□ -0.1
COL6A2P12110 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC14.4□□□□□ -0.1
COL6A2P12110 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC14.4□□□□□ -0.1
COL6A2P12110 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
COL6A2P12110 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A2P12110 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
COL6A2P12110 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
COL6A2P12110 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
COL6A2P12110 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A2P12110 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A2P12110 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A2P12110 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
COL6A2P12110 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A2P12110 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A2P12110 CD8B2-202ENST00000417670 633 ntBASIC14.4□□□□□ -0.1
COL6A2P12110 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.4□□□□□ -0.1
COL6A2P12110 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC14.4□□□□□ -0.1
COL6A2P12110 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC14.4□□□□□ -0.1
COL6A2P12110 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.4□□□□□ -0.1
COL6A2P12110 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
COL6A2P12110 WASH4P-201ENST00000564273 1246 ntBASIC14.4□□□□□ -0.1
COL6A2P12110 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC14.4□□□□□ -0.1
COL6A2P12110 RN7SL204P-201ENST00000582831 262 ntBASIC14.4□□□□□ -0.1
COL6A2P12110 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
COL6A2P12110 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC14.4□□□□□ -0.1
COL6A2P12110 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.4□□□□□ -0.1
COL6A2P12110 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC14.4□□□□□ -0.1
COL6A2P12110 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A2P12110 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A2P12110 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A2P12110 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A2P12110 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A2P12110 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A2P12110 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.4□□□□□ -0.1
COL6A2P12110 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A2P12110 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC14.4□□□□□ -0.1
COL6A2P12110 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A2P12110 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC14.4□□□□□ -0.1
COL6A2P12110 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
COL6A2P12110 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
COL6A2P12110 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A2P12110 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A2P12110 AC072061.1-201ENST00000569710 2234 ntBASIC14.39□□□□□ -0.11
COL6A2P12110 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms