Protein–RNA interactions for Protein: P11387

TOP1, DNA topoisomerase 1, humanhuman

Known RBP Predictions only

Length 765 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP1P11387 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TOP1P11387 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TOP1P11387 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TOP1P11387 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
TOP1P11387 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TOP1P11387 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TOP1P11387 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TOP1P11387 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TOP1P11387 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC17.11■□□□□ 0.33
TOP1P11387 DEF8-202ENST00000418391 852 ntTSL 2 BASIC17.11■□□□□ 0.33
TOP1P11387 BCYRN1-201ENST00000418539 200 ntBASIC17.11■□□□□ 0.33
TOP1P11387 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TOP1P11387 IGHVIII-5-2-201ENST00000522505 261 ntBASIC17.11■□□□□ 0.33
TOP1P11387 ADM-202ENST00000524948 584 ntTSL 2 BASIC17.11■□□□□ 0.33
TOP1P11387 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TOP1P11387 AC100757.4-201ENST00000626934 759 ntBASIC17.11■□□□□ 0.33
TOP1P11387 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC17.11■□□□□ 0.33
TOP1P11387 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TOP1P11387 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TOP1P11387 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TOP1P11387 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TOP1P11387 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC17.11■□□□□ 0.33
TOP1P11387 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC17.11■□□□□ 0.33
TOP1P11387 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TOP1P11387 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TOP1P11387 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
TOP1P11387 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TOP1P11387 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TOP1P11387 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC17.1■□□□□ 0.33
TOP1P11387 LINC01230-201ENST00000625222 3017 ntBASIC17.1■□□□□ 0.33
TOP1P11387 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TOP1P11387 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TOP1P11387 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TOP1P11387 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TOP1P11387 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC17.1■□□□□ 0.33
TOP1P11387 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TOP1P11387 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
TOP1P11387 AGGF1P1-201ENST00000509500 2073 ntBASIC17.1■□□□□ 0.33
TOP1P11387 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TOP1P11387 AC078875.1-201ENST00000431907 724 ntBASIC17.1■□□□□ 0.33
TOP1P11387 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TOP1P11387 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC17.1■□□□□ 0.33
TOP1P11387 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC17.1■□□□□ 0.33
TOP1P11387 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC17.1■□□□□ 0.33
TOP1P11387 AL805961.1-203ENST00000641078 1258 ntBASIC17.1■□□□□ 0.33
TOP1P11387 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
TOP1P11387 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TOP1P11387 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TOP1P11387 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TOP1P11387 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TOP1P11387 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TOP1P11387 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC17.1■□□□□ 0.33
TOP1P11387 AC005840.4-201ENST00000541242 2494 ntBASIC17.1■□□□□ 0.33
TOP1P11387 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TOP1P11387 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC17.1■□□□□ 0.33
TOP1P11387 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TOP1P11387 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TOP1P11387 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TOP1P11387 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TOP1P11387 TNN-203ENST00000622870 3719 ntTSL 5 BASIC17.1■□□□□ 0.33
TOP1P11387 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TOP1P11387 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TOP1P11387 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TOP1P11387 BX640514.1-201ENST00000583223 1918 ntBASIC17.09■□□□□ 0.33
TOP1P11387 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP1P11387 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP1P11387 MYADML-201ENST00000474610 2147 ntBASIC17.09■□□□□ 0.33
TOP1P11387 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP1P11387 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
TOP1P11387 BANP-203ENST00000393207 2438 ntTSL 2 BASIC17.09■□□□□ 0.33
TOP1P11387 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP1P11387 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TOP1P11387 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC17.09■□□□□ 0.33
TOP1P11387 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
TOP1P11387 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
TOP1P11387 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TOP1P11387 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC17.09■□□□□ 0.33
TOP1P11387 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC17.09■□□□□ 0.33
TOP1P11387 SLC16A6P1-201ENST00000413214 1059 ntBASIC17.09■□□□□ 0.33
TOP1P11387 CYP46A4P-201ENST00000414953 267 ntBASIC17.09■□□□□ 0.33
TOP1P11387 KRTAP19-9P-201ENST00000421795 191 ntBASIC17.09■□□□□ 0.33
TOP1P11387 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC17.09■□□□□ 0.33
TOP1P11387 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC17.09■□□□□ 0.33
TOP1P11387 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP1P11387 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC17.09■□□□□ 0.33
TOP1P11387 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TOP1P11387 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC17.09■□□□□ 0.33
TOP1P11387 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC17.09■□□□□ 0.33
TOP1P11387 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC17.09■□□□□ 0.33
TOP1P11387 AC027237.1-201ENST00000560942 655 ntBASIC17.09■□□□□ 0.33
TOP1P11387 IGHV3OR16-16-201ENST00000563644 343 ntBASIC17.09■□□□□ 0.33
TOP1P11387 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP1P11387 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TOP1P11387 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC17.09■□□□□ 0.33
TOP1P11387 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
TOP1P11387 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC17.09■□□□□ 0.33
TOP1P11387 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP1P11387 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
TOP1P11387 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TOP1P11387 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms