Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 MIR6727-201ENST00000620702 65 ntBASIC13.29□□□□□ -0.28
HOXD4P09016 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC13.29□□□□□ -0.28
HOXD4P09016 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC13.29□□□□□ -0.28
HOXD4P09016 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC13.29□□□□□ -0.28
HOXD4P09016 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 AC089987.1-201ENST00000551654 2209 ntBASIC13.29□□□□□ -0.28
HOXD4P09016 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC13.29□□□□□ -0.28
HOXD4P09016 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC13.29□□□□□ -0.28
HOXD4P09016 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC13.29□□□□□ -0.28
HOXD4P09016 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
HOXD4P09016 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD4P09016 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC13.29□□□□□ -0.28
HOXD4P09016 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC13.29□□□□□ -0.28
HOXD4P09016 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC13.29□□□□□ -0.28
HOXD4P09016 AC011840.2-201ENST00000563063 1520 ntBASIC13.29□□□□□ -0.28
HOXD4P09016 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 MROH4P-201ENST00000431302 1578 ntBASIC13.28□□□□□ -0.28
HOXD4P09016 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC13.28□□□□□ -0.28
HOXD4P09016 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
HOXD4P09016 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC13.28□□□□□ -0.28
HOXD4P09016 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
HOXD4P09016 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
HOXD4P09016 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
HOXD4P09016 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC13.28□□□□□ -0.28
HOXD4P09016 PARN-202ENST00000420015 2360 ntTSL 2 BASIC13.28□□□□□ -0.28
HOXD4P09016 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC13.28□□□□□ -0.28
HOXD4P09016 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC13.28□□□□□ -0.28
HOXD4P09016 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
HOXD4P09016 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 RN7SKP230-201ENST00000365642 335 ntBASIC13.28□□□□□ -0.28
HOXD4P09016 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
HOXD4P09016 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC13.28□□□□□ -0.28
HOXD4P09016 AC006335.1-201ENST00000445200 547 ntBASIC13.28□□□□□ -0.28
HOXD4P09016 TMEM198B-204ENST00000484016 896 ntBASIC13.28□□□□□ -0.28
HOXD4P09016 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
HOXD4P09016 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
HOXD4P09016 CSH2-206ENST00000560142 749 ntTSL 5 BASIC13.28□□□□□ -0.28
HOXD4P09016 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC13.28□□□□□ -0.28
HOXD4P09016 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 MIR4722-201ENST00000578292 60 ntBASIC13.28□□□□□ -0.28
HOXD4P09016 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC13.28□□□□□ -0.28
HOXD4P09016 AL645939.5-201ENST00000606834 243 ntBASIC13.28□□□□□ -0.28
HOXD4P09016 SNX1-214ENST00000625244 324 ntTSL 5 BASIC13.28□□□□□ -0.28
HOXD4P09016 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC13.28□□□□□ -0.28
HOXD4P09016 AL805961.1-203ENST00000641078 1258 ntBASIC13.28□□□□□ -0.28
HOXD4P09016 AC068587.8-201ENST00000641239 219 ntBASIC13.28□□□□□ -0.28
HOXD4P09016 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC13.28□□□□□ -0.28
HOXD4P09016 HSPA7-201ENST00000445535 1927 ntBASIC13.28□□□□□ -0.28
HOXD4P09016 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC13.28□□□□□ -0.28
HOXD4P09016 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
HOXD4P09016 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
HOXD4P09016 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
HOXD4P09016 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC13.28□□□□□ -0.28
HOXD4P09016 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
HOXD4P09016 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
HOXD4P09016 AC140479.7-201ENST00000636301 2332 ntBASIC13.28□□□□□ -0.28
HOXD4P09016 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 MEST-204ENST00000393187 2380 ntAPPRIS ALT1 TSL 5 BASIC13.28□□□□□ -0.28
HOXD4P09016 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
HOXD4P09016 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
HOXD4P09016 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD4P09016 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC13.28□□□□□ -0.28
HOXD4P09016 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC13.27□□□□□ -0.28
HOXD4P09016 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXD4P09016 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXD4P09016 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC13.27□□□□□ -0.28
HOXD4P09016 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 198.6 ms