Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
NKX2-2O95096 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
NKX2-2O95096 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
NKX2-2O95096 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 KRT18P36-201ENST00000411618 1276 ntBASIC13.39□□□□□ -0.27
NKX2-2O95096 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 VDAC1P1-201ENST00000439229 848 ntBASIC13.39□□□□□ -0.27
NKX2-2O95096 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC13.39□□□□□ -0.27
NKX2-2O95096 AL591846.1-201ENST00000451736 433 ntBASIC13.39□□□□□ -0.27
NKX2-2O95096 APOA2-204ENST00000464492 530 ntTSL 3 BASIC13.39□□□□□ -0.27
NKX2-2O95096 RPL18P13-201ENST00000478088 569 ntBASIC13.39□□□□□ -0.27
NKX2-2O95096 TMEM198B-204ENST00000484016 896 ntBASIC13.39□□□□□ -0.27
NKX2-2O95096 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC13.39□□□□□ -0.27
NKX2-2O95096 PGAM1P5-201ENST00000548011 764 ntBASIC13.39□□□□□ -0.27
NKX2-2O95096 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC13.39□□□□□ -0.27
NKX2-2O95096 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC13.39□□□□□ -0.27
NKX2-2O95096 BNIP3P13-201ENST00000599968 566 ntBASIC13.39□□□□□ -0.27
NKX2-2O95096 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
NKX2-2O95096 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
NKX2-2O95096 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
NKX2-2O95096 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
NKX2-2O95096 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC13.39□□□□□ -0.27
NKX2-2O95096 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC13.39□□□□□ -0.27
NKX2-2O95096 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC13.39□□□□□ -0.27
NKX2-2O95096 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC13.39□□□□□ -0.27
NKX2-2O95096 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC13.39□□□□□ -0.27
NKX2-2O95096 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
NKX2-2O95096 AHCYP4-201ENST00000419201 1315 ntBASIC13.39□□□□□ -0.27
NKX2-2O95096 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
NKX2-2O95096 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
NKX2-2O95096 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC13.38□□□□□ -0.27
NKX2-2O95096 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC13.38□□□□□ -0.27
NKX2-2O95096 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX2-2O95096 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX2-2O95096 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC13.38□□□□□ -0.27
NKX2-2O95096 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
NKX2-2O95096 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC13.38□□□□□ -0.27
NKX2-2O95096 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
NKX2-2O95096 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX2-2O95096 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
NKX2-2O95096 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC13.38□□□□□ -0.27
NKX2-2O95096 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC13.38□□□□□ -0.27
NKX2-2O95096 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
NKX2-2O95096 RNMTL1P1-201ENST00000454103 560 ntBASIC13.38□□□□□ -0.27
NKX2-2O95096 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC13.38□□□□□ -0.27
NKX2-2O95096 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC13.38□□□□□ -0.27
NKX2-2O95096 HLA-J-204ENST00000495278 958 ntBASIC13.38□□□□□ -0.27
NKX2-2O95096 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC13.38□□□□□ -0.27
NKX2-2O95096 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC13.38□□□□□ -0.27
NKX2-2O95096 SCARNA21-201ENST00000517026 139 ntBASIC13.38□□□□□ -0.27
NKX2-2O95096 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
NKX2-2O95096 PAM16-211ENST00000575848 518 ntTSL 3 BASIC13.38□□□□□ -0.27
NKX2-2O95096 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
NKX2-2O95096 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC13.38□□□□□ -0.27
NKX2-2O95096 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC13.38□□□□□ -0.27
NKX2-2O95096 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
NKX2-2O95096 AC022748.3-201ENST00000621828 275 ntBASIC13.38□□□□□ -0.27
NKX2-2O95096 AL591471.1-201ENST00000621855 229 ntBASIC13.38□□□□□ -0.27
NKX2-2O95096 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC13.38□□□□□ -0.27
NKX2-2O95096 PCBP2-OT1-201ENST00000634357 590 ntBASIC13.38□□□□□ -0.27
NKX2-2O95096 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX2-2O95096 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
NKX2-2O95096 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC13.38□□□□□ -0.27
NKX2-2O95096 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
NKX2-2O95096 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX2-2O95096 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC13.38□□□□□ -0.27
NKX2-2O95096 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
NKX2-2O95096 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
NKX2-2O95096 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
NKX2-2O95096 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX2-2O95096 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC13.38□□□□□ -0.27
NKX2-2O95096 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms