Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC188H7C350 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC188H7C350 AC092552.1-201ENST00000547243 906 ntBASIC15.16■□□□□ 0.02
CCDC188H7C350 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC15.16■□□□□ 0.02
CCDC188H7C350 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC15.16■□□□□ 0.02
CCDC188H7C350 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CCDC188H7C350 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC15.16■□□□□ 0.02
CCDC188H7C350 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.16■□□□□ 0.02
CCDC188H7C350 AC093726.1-201ENST00000608064 963 ntBASIC15.16■□□□□ 0.02
CCDC188H7C350 AC138466.3-201ENST00000619983 221 ntBASIC15.16■□□□□ 0.02
CCDC188H7C350 AC079781.4-201ENST00000641908 219 ntBASIC15.16■□□□□ 0.02
CCDC188H7C350 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC188H7C350 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
CCDC188H7C350 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC188H7C350 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CCDC188H7C350 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC15.16■□□□□ 0.02
CCDC188H7C350 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
CCDC188H7C350 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
CCDC188H7C350 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC188H7C350 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC15.16■□□□□ 0.02
CCDC188H7C350 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC188H7C350 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC188H7C350 AC009093.10-201ENST00000641956 1442 ntBASIC15.16■□□□□ 0.02
CCDC188H7C350 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC15.16■□□□□ 0.02
CCDC188H7C350 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC188H7C350 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC188H7C350 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC188H7C350 AC083964.2-201ENST00000623988 2396 ntBASIC15.16■□□□□ 0.02
CCDC188H7C350 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC15.15■□□□□ 0.02
CCDC188H7C350 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC15.15■□□□□ 0.02
CCDC188H7C350 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC15.15■□□□□ 0.02
CCDC188H7C350 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 AL365181.3-201ENST00000605886 3222 ntBASIC15.15■□□□□ 0.02
CCDC188H7C350 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC15.15■□□□□ 0.02
CCDC188H7C350 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC15.15■□□□□ 0.02
CCDC188H7C350 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 SLC7A15P-201ENST00000424028 1363 ntBASIC15.15■□□□□ 0.02
CCDC188H7C350 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC15.15■□□□□ 0.02
CCDC188H7C350 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC15.15■□□□□ 0.02
CCDC188H7C350 STK25-235ENST00000543554 2556 ntTSL 2 BASIC15.15■□□□□ 0.02
CCDC188H7C350 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 OSM-203ENST00000403463 464 ntTSL 3 BASIC15.15■□□□□ 0.02
CCDC188H7C350 POM121L8P-201ENST00000417732 1281 ntBASIC15.15■□□□□ 0.02
CCDC188H7C350 POM121L9P-203ENST00000441984 1285 ntBASIC15.15■□□□□ 0.02
CCDC188H7C350 CD81-207ENST00000481687 890 ntTSL 2 BASIC15.15■□□□□ 0.02
CCDC188H7C350 FTLP10-202ENST00000505798 471 ntBASIC15.15■□□□□ 0.02
CCDC188H7C350 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC15.15■□□□□ 0.02
CCDC188H7C350 ENPP7P5-201ENST00000541031 1031 ntBASIC15.15■□□□□ 0.02
CCDC188H7C350 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 DUX4L27-201ENST00000554796 1261 ntBASIC15.15■□□□□ 0.02
CCDC188H7C350 MIR497HG-202ENST00000572453 3838 ntBASIC15.15■□□□□ 0.02
CCDC188H7C350 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC15.15■□□□□ 0.02
CCDC188H7C350 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC15.15■□□□□ 0.02
CCDC188H7C350 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.15■□□□□ 0.02
CCDC188H7C350 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CCDC188H7C350 METTL26-214ENST00000614890 801 ntTSL 3 BASIC15.15■□□□□ 0.02
CCDC188H7C350 AC093028.1-201ENST00000622998 982 ntBASIC15.15■□□□□ 0.02
CCDC188H7C350 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC15.15■□□□□ 0.02
CCDC188H7C350 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC15.15■□□□□ 0.02
CCDC188H7C350 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
CCDC188H7C350 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
CCDC188H7C350 FKBP4P6-201ENST00000457486 1332 ntBASIC15.15■□□□□ 0.02
CCDC188H7C350 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
CCDC188H7C350 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC15.15■□□□□ 0.02
CCDC188H7C350 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC188H7C350 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.02
CCDC188H7C350 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC188H7C350 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC15.14■□□□□ 0.01
CCDC188H7C350 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC188H7C350 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC188H7C350 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms