Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC16.96■□□□□ 0.31
CCDC39Q9UFE4 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC39Q9UFE4 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
CCDC39Q9UFE4 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC16.96■□□□□ 0.31
CCDC39Q9UFE4 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC39Q9UFE4 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC16.96■□□□□ 0.31
CCDC39Q9UFE4 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC16.96■□□□□ 0.31
CCDC39Q9UFE4 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC39Q9UFE4 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
CCDC39Q9UFE4 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC39Q9UFE4 CROT-203ENST00000419147 2959 ntTSL 2 BASIC16.96■□□□□ 0.31
CCDC39Q9UFE4 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC39Q9UFE4 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC39Q9UFE4 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC39Q9UFE4 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC39Q9UFE4 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.96■□□□□ 0.3
CCDC39Q9UFE4 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 MX1-218ENST00000619682 1980 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 BEND3P3-201ENST00000611030 2440 ntBASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CCDC39Q9UFE4 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 AP006294.1-201ENST00000415407 339 ntBASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 HMGN1P19-201ENST00000436976 333 ntBASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 AC027307.3-201ENST00000594262 1100 ntBASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
CCDC39Q9UFE4 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms