Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 AC010141.1-201ENST00000411585 623 ntBASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 HNRNPA1P27-201ENST00000412087 955 ntBASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 AC112492.5-201ENST00000421897 457 ntBASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 C2orf69P2-201ENST00000562032 1123 ntBASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 AL136301.1-201ENST00000615830 422 ntBASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 RHOXF1P1-202ENST00000635473 501 ntBASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 GZMB-202ENST00000382540 816 ntTSL 5 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 SKA2-202ENST00000437036 625 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 CHMP1AP1-201ENST00000445563 662 ntBASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 AP000812.2-201ENST00000538934 718 ntBASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 PPY2P-201ENST00000582808 702 ntBASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 AC104506.1-201ENST00000609247 429 ntBASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 SHC1P1-201ENST00000425230 1745 ntBASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
VPS29Q9UBQ0 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VPS29Q9UBQ0 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms