Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 HPGD-203ENST00000422112 805 ntTSL 2 BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 AC253536.4-201ENST00000440539 267 ntBASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 ELP5-212ENST00000574255 671 ntTSL 2 BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 MIR6727-201ENST00000620702 65 ntBASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 AC067931.2-201ENST00000623655 2003 ntBASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 AC012617.1-204ENST00000586340 2305 ntBASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 RN7SL832P-201ENST00000607781 1756 ntBASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 AC140479.7-201ENST00000636301 2332 ntBASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 TPM1-223ENST00000560445 485 ntTSL 3 BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 AC025262.2-201ENST00000623975 1056 ntBASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PAAF1Q9BRP4 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 MIR645-201ENST00000385283 94 ntBASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 ORAOV1P1-201ENST00000503108 395 ntBASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 MT3-203ENST00000565838 421 ntTSL 3 BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 MIR6074-201ENST00000612054 107 ntBASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
PAAF1Q9BRP4 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms