Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.6■□□□□ 0.25
ERCC4Q92889 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC4Q92889 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC16.6■□□□□ 0.25
ERCC4Q92889 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
ERCC4Q92889 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
ERCC4Q92889 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC16.6■□□□□ 0.25
ERCC4Q92889 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC16.6■□□□□ 0.25
ERCC4Q92889 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC4Q92889 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC4Q92889 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
ERCC4Q92889 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC4Q92889 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC16.6■□□□□ 0.25
ERCC4Q92889 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC16.59■□□□□ 0.25
ERCC4Q92889 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC4Q92889 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC16.59■□□□□ 0.25
ERCC4Q92889 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
ERCC4Q92889 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC4Q92889 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
ERCC4Q92889 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC4Q92889 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC4Q92889 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC16.59■□□□□ 0.25
ERCC4Q92889 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC4Q92889 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC4Q92889 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC4Q92889 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC4Q92889 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
ERCC4Q92889 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
ERCC4Q92889 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
ERCC4Q92889 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC16.59■□□□□ 0.25
ERCC4Q92889 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC4Q92889 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC4Q92889 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
ERCC4Q92889 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC4Q92889 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
ERCC4Q92889 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC4Q92889 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC16.59■□□□□ 0.25
ERCC4Q92889 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.59■□□□□ 0.25
ERCC4Q92889 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
ERCC4Q92889 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC16.59■□□□□ 0.25
ERCC4Q92889 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC16.59■□□□□ 0.25
ERCC4Q92889 AC004233.3-201ENST00000607794 1269 ntBASIC16.59■□□□□ 0.25
ERCC4Q92889 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC4Q92889 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC4Q92889 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
ERCC4Q92889 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC16.59■□□□□ 0.25
ERCC4Q92889 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC4Q92889 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
ERCC4Q92889 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC16.59■□□□□ 0.25
ERCC4Q92889 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC4Q92889 AL031595.1-201ENST00000623969 4709 ntBASIC16.59■□□□□ 0.25
ERCC4Q92889 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC16.59■□□□□ 0.25
ERCC4Q92889 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC4Q92889 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC4Q92889 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC16.59■□□□□ 0.25
ERCC4Q92889 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC4Q92889 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC16.59■□□□□ 0.25
ERCC4Q92889 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC4Q92889 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC4Q92889 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
ERCC4Q92889 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC16.58■□□□□ 0.25
ERCC4Q92889 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
ERCC4Q92889 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
ERCC4Q92889 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC16.58■□□□□ 0.25
ERCC4Q92889 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
ERCC4Q92889 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
ERCC4Q92889 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
ERCC4Q92889 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
ERCC4Q92889 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ERCC4Q92889 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
ERCC4Q92889 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
ERCC4Q92889 POM121L8P-201ENST00000417732 1281 ntBASIC16.58■□□□□ 0.24
ERCC4Q92889 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC16.58■□□□□ 0.24
ERCC4Q92889 POM121L9P-203ENST00000441984 1285 ntBASIC16.58■□□□□ 0.24
ERCC4Q92889 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.24
ERCC4Q92889 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
ERCC4Q92889 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ERCC4Q92889 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
ERCC4Q92889 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
ERCC4Q92889 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
ERCC4Q92889 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.58■□□□□ 0.24
ERCC4Q92889 AC138696.2-201ENST00000607376 223 ntBASIC16.58■□□□□ 0.24
ERCC4Q92889 RPSAP52-203ENST00000622976 1023 ntBASIC16.58■□□□□ 0.24
ERCC4Q92889 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC16.58■□□□□ 0.24
ERCC4Q92889 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
ERCC4Q92889 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC16.58■□□□□ 0.24
ERCC4Q92889 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
ERCC4Q92889 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ERCC4Q92889 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
ERCC4Q92889 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC16.58■□□□□ 0.24
ERCC4Q92889 AC090643.2-201ENST00000623442 2029 ntBASIC16.58■□□□□ 0.24
ERCC4Q92889 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC16.58■□□□□ 0.24
ERCC4Q92889 DGCR9-201ENST00000609630 2415 ntBASIC16.58■□□□□ 0.24
ERCC4Q92889 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
ERCC4Q92889 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC16.58■□□□□ 0.24
ERCC4Q92889 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
ERCC4Q92889 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ERCC4Q92889 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
ERCC4Q92889 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
ERCC4Q92889 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC16.57■□□□□ 0.24
ERCC4Q92889 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 157.7 ms