Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 TPM3P8-201ENST00000330554 643 ntBASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 AP001889.1-201ENST00000525414 633 ntBASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 NEU3-203ENST00000529024 581 ntTSL 3 BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 CETP-203ENST00000566128 1733 ntTSL 5 BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 MIR4745-201ENST00000577608 62 ntBASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 AL365181.3-201ENST00000605886 3222 ntBASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 MVK-217ENST00000639206 367 ntTSL 5 BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 AC064801.2-201ENST00000625052 1303 ntBASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 AC015909.5-201ENST00000624336 2266 ntBASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
ATG4AQ8WYN0 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 RPL28-204ENST00000431533 590 ntTSL 2 BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 RPL28-207ENST00000558815 616 ntTSL 2 BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 OR10B1P-201ENST00000601666 907 ntBASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms