Protein–RNA interactions for Protein: Q8TER0

SNED1, Sushi, nidogen and EGF-like domain-containing protein 1, humanhuman

Predictions only

Length 1,413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1Q8TER0 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SNED1Q8TER0 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SNED1Q8TER0 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC17.31■□□□□ 0.36
SNED1Q8TER0 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC17.31■□□□□ 0.36
SNED1Q8TER0 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
SNED1Q8TER0 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC17.31■□□□□ 0.36
SNED1Q8TER0 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC17.31■□□□□ 0.36
SNED1Q8TER0 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SNED1Q8TER0 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SNED1Q8TER0 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SNED1Q8TER0 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SNED1Q8TER0 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC17.31■□□□□ 0.36
SNED1Q8TER0 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SNED1Q8TER0 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.31■□□□□ 0.36
SNED1Q8TER0 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SNED1Q8TER0 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SNED1Q8TER0 SLC9A7P1-201ENST00000554295 3311 ntBASIC17.31■□□□□ 0.36
SNED1Q8TER0 AL354702.1-201ENST00000442006 1960 ntBASIC17.31■□□□□ 0.36
SNED1Q8TER0 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SNED1Q8TER0 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SNED1Q8TER0 PIFO-201ENST00000369737 746 ntTSL 2 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 RPL3P5-201ENST00000441645 1232 ntBASIC17.3■□□□□ 0.36
SNED1Q8TER0 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 AL160191.2-201ENST00000603975 601 ntBASIC17.3■□□□□ 0.36
SNED1Q8TER0 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SNED1Q8TER0 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SNED1Q8TER0 MPI-203ENST00000535694 1523 ntTSL 2 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SNED1Q8TER0 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SNED1Q8TER0 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SNED1Q8TER0 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SNED1Q8TER0 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SNED1Q8TER0 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SNED1Q8TER0 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC17.3■□□□□ 0.36
SNED1Q8TER0 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SNED1Q8TER0 SHMT1P1-201ENST00000419974 1312 ntBASIC17.3■□□□□ 0.36
SNED1Q8TER0 AC022080.1-201ENST00000366255 781 ntBASIC17.3■□□□□ 0.36
SNED1Q8TER0 OR7E115P-201ENST00000382617 1024 ntBASIC17.3■□□□□ 0.36
SNED1Q8TER0 PGAM1P11-201ENST00000416729 680 ntBASIC17.3■□□□□ 0.36
SNED1Q8TER0 LINP1-201ENST00000417112 917 ntTSL 2 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 AL512599.1-201ENST00000430724 685 ntBASIC17.3■□□□□ 0.36
SNED1Q8TER0 EEF1DP2-201ENST00000433698 843 ntBASIC17.3■□□□□ 0.36
SNED1Q8TER0 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 KRT18P62-201ENST00000446618 1287 ntBASIC17.3■□□□□ 0.36
SNED1Q8TER0 BCRP4-201ENST00000506079 804 ntBASIC17.3■□□□□ 0.36
SNED1Q8TER0 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 KNOP1P1-201ENST00000542108 989 ntBASIC17.3■□□□□ 0.36
SNED1Q8TER0 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC17.3■□□□□ 0.36
SNED1Q8TER0 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SNED1Q8TER0 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC17.29■□□□□ 0.36
SNED1Q8TER0 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SNED1Q8TER0 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
SNED1Q8TER0 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
SNED1Q8TER0 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SNED1Q8TER0 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC17.29■□□□□ 0.36
SNED1Q8TER0 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SNED1Q8TER0 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SNED1Q8TER0 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SNED1Q8TER0 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SNED1Q8TER0 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.29■□□□□ 0.36
SNED1Q8TER0 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC17.29■□□□□ 0.36
SNED1Q8TER0 AC215219.1-201ENST00000400706 1817 ntBASIC17.29■□□□□ 0.36
SNED1Q8TER0 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SNED1Q8TER0 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC17.29■□□□□ 0.36
SNED1Q8TER0 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SNED1Q8TER0 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.29■□□□□ 0.36
SNED1Q8TER0 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.29■□□□□ 0.36
SNED1Q8TER0 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC17.29■□□□□ 0.36
SNED1Q8TER0 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SNED1Q8TER0 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SNED1Q8TER0 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SNED1Q8TER0 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
SNED1Q8TER0 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SNED1Q8TER0 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC17.29■□□□□ 0.36
SNED1Q8TER0 RPS18P9-201ENST00000482817 460 ntBASIC17.29■□□□□ 0.36
SNED1Q8TER0 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC17.29■□□□□ 0.36
SNED1Q8TER0 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC17.29■□□□□ 0.36
SNED1Q8TER0 CES1P2-201ENST00000566467 1242 ntBASIC17.29■□□□□ 0.36
SNED1Q8TER0 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC17.29■□□□□ 0.36
SNED1Q8TER0 NAV1-210ENST00000593583 726 ntBASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms