Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 AC026803.1-201ENST00000569130 274 ntBASIC14.07□□□□□ -0.16
COL28A1Q2UY09 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 AC244250.3-201ENST00000620749 366 ntBASIC14.07□□□□□ -0.16
COL28A1Q2UY09 AC073911.3-201ENST00000624401 631 ntBASIC14.07□□□□□ -0.16
COL28A1Q2UY09 AC092299.1-201ENST00000632679 757 ntBASIC14.07□□□□□ -0.16
COL28A1Q2UY09 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL28A1Q2UY09 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 AL357373.1-201ENST00000394974 322 ntBASIC14.06□□□□□ -0.16
COL28A1Q2UY09 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 AC008723.1-201ENST00000506922 207 ntBASIC14.06□□□□□ -0.16
COL28A1Q2UY09 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 AL109837.1-201ENST00000603272 613 ntBASIC14.06□□□□□ -0.16
COL28A1Q2UY09 AC006158.1-201ENST00000610661 249 ntBASIC14.06□□□□□ -0.16
COL28A1Q2UY09 AC105137.3-201ENST00000617588 984 ntBASIC14.06□□□□□ -0.16
COL28A1Q2UY09 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14.06□□□□□ -0.16
COL28A1Q2UY09 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.05□□□□□ -0.16
COL28A1Q2UY09 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 AMT-204ENST00000427987 1646 ntTSL 5 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 SOD2-202ENST00000367054 815 ntTSL 2 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 AC239868.1-201ENST00000369385 493 ntBASIC14.05□□□□□ -0.16
COL28A1Q2UY09 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 AC130709.1-201ENST00000484779 1212 ntBASIC14.05□□□□□ -0.16
COL28A1Q2UY09 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 AC004066.1-201ENST00000502488 802 ntBASIC14.05□□□□□ -0.16
COL28A1Q2UY09 HNRNPA1P36-201ENST00000521313 955 ntBASIC14.05□□□□□ -0.16
COL28A1Q2UY09 AC009779.1-201ENST00000551138 283 ntBASIC14.05□□□□□ -0.16
COL28A1Q2UY09 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC14.05□□□□□ -0.16
COL28A1Q2UY09 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms