Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
RNF4P78317 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC13.51□□□□□ -0.25
RNF4P78317 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
RNF4P78317 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC13.51□□□□□ -0.25
RNF4P78317 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
RNF4P78317 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 AC016700.1-201ENST00000429424 312 ntBASIC13.51□□□□□ -0.25
RNF4P78317 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC13.51□□□□□ -0.25
RNF4P78317 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC13.51□□□□□ -0.25
RNF4P78317 OARD1-204ENST00000464633 717 ntTSL 2 BASIC13.51□□□□□ -0.25
RNF4P78317 FADS2-212ENST00000522639 360 ntTSL 5 BASIC13.51□□□□□ -0.25
RNF4P78317 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC13.51□□□□□ -0.25
RNF4P78317 FADS2-215ENST00000574708 385 ntTSL 3 BASIC13.51□□□□□ -0.25
RNF4P78317 RN7SL371P-201ENST00000578099 267 ntBASIC13.51□□□□□ -0.25
RNF4P78317 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
RNF4P78317 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 PPP1R26P4-201ENST00000619065 3527 ntBASIC13.51□□□□□ -0.25
RNF4P78317 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
RNF4P78317 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
RNF4P78317 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
RNF4P78317 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC13.51□□□□□ -0.25
RNF4P78317 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC13.51□□□□□ -0.25
RNF4P78317 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
RNF4P78317 AP001267.2-201ENST00000532619 2086 ntBASIC13.51□□□□□ -0.25
RNF4P78317 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.51□□□□□ -0.25
RNF4P78317 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
RNF4P78317 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RNF4P78317 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
RNF4P78317 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 AMT-204ENST00000427987 1646 ntTSL 5 BASIC13.5□□□□□ -0.25
RNF4P78317 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC13.5□□□□□ -0.25
RNF4P78317 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC13.5□□□□□ -0.25
RNF4P78317 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC13.5□□□□□ -0.25
RNF4P78317 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
RNF4P78317 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC13.5□□□□□ -0.25
RNF4P78317 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
RNF4P78317 CRCP-204ENST00000398684 492 ntTSL 2 BASIC13.5□□□□□ -0.25
RNF4P78317 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC13.5□□□□□ -0.25
RNF4P78317 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC13.5□□□□□ -0.25
RNF4P78317 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 AC022217.1-201ENST00000521069 738 ntBASIC13.5□□□□□ -0.25
RNF4P78317 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 AC009779.1-201ENST00000551138 283 ntBASIC13.5□□□□□ -0.25
RNF4P78317 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC13.5□□□□□ -0.25
RNF4P78317 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC13.5□□□□□ -0.25
RNF4P78317 AL132994.2-201ENST00000603120 687 ntBASIC13.5□□□□□ -0.25
RNF4P78317 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC13.5□□□□□ -0.25
RNF4P78317 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC13.5□□□□□ -0.25
RNF4P78317 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC13.5□□□□□ -0.25
RNF4P78317 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
RNF4P78317 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
RNF4P78317 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC13.5□□□□□ -0.25
RNF4P78317 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RNF4P78317 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
RNF4P78317 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNF4P78317 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
RNF4P78317 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms