Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.37□□□□□ -0.11
PKNOX1P55347 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.37□□□□□ -0.11
PKNOX1P55347 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 GPALPP1-207ENST00000611650 899 ntBASIC14.37□□□□□ -0.11
PKNOX1P55347 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
PKNOX1P55347 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
PKNOX1P55347 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 AL031595.1-201ENST00000623969 4709 ntBASIC14.37□□□□□ -0.11
PKNOX1P55347 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 CLUHP2-201ENST00000426660 1303 ntBASIC14.37□□□□□ -0.11
PKNOX1P55347 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14.37□□□□□ -0.11
PKNOX1P55347 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC14.37□□□□□ -0.11
PKNOX1P55347 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC14.36□□□□□ -0.11
PKNOX1P55347 AC111170.3-201ENST00000624282 2464 ntBASIC14.36□□□□□ -0.11
PKNOX1P55347 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC14.36□□□□□ -0.11
PKNOX1P55347 AC139712.1-201ENST00000378256 1875 ntBASIC14.36□□□□□ -0.11
PKNOX1P55347 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
PKNOX1P55347 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC14.36□□□□□ -0.11
PKNOX1P55347 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.36□□□□□ -0.11
PKNOX1P55347 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.36□□□□□ -0.11
PKNOX1P55347 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
PKNOX1P55347 ALG3P1-201ENST00000508806 1114 ntBASIC14.36□□□□□ -0.11
PKNOX1P55347 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC14.36□□□□□ -0.11
PKNOX1P55347 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC14.36□□□□□ -0.11
PKNOX1P55347 MIR497HG-202ENST00000572453 3838 ntBASIC14.36□□□□□ -0.11
PKNOX1P55347 CTBP2P3-201ENST00000585629 1255 ntBASIC14.36□□□□□ -0.11
PKNOX1P55347 BX088702.1-201ENST00000610784 235 ntBASIC14.36□□□□□ -0.11
PKNOX1P55347 WFDC1-204ENST00000613603 549 ntBASIC14.36□□□□□ -0.11
PKNOX1P55347 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC14.36□□□□□ -0.11
PKNOX1P55347 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC14.36□□□□□ -0.11
PKNOX1P55347 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
PKNOX1P55347 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC14.36□□□□□ -0.11
PKNOX1P55347 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC14.36□□□□□ -0.11
PKNOX1P55347 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC14.36□□□□□ -0.11
PKNOX1P55347 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
PKNOX1P55347 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC14.36□□□□□ -0.11
PKNOX1P55347 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PKNOX1P55347 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC14.36□□□□□ -0.11
PKNOX1P55347 AC015818.8-201ENST00000587907 1519 ntBASIC14.36□□□□□ -0.11
PKNOX1P55347 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKNOX1P55347 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKNOX1P55347 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC14.35□□□□□ -0.11
PKNOX1P55347 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKNOX1P55347 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKNOX1P55347 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKNOX1P55347 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
PKNOX1P55347 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
PKNOX1P55347 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKNOX1P55347 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC14.35□□□□□ -0.11
PKNOX1P55347 KHSRPP1-201ENST00000427983 1768 ntBASIC14.35□□□□□ -0.11
PKNOX1P55347 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKNOX1P55347 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKNOX1P55347 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKNOX1P55347 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PKNOX1P55347 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKNOX1P55347 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKNOX1P55347 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PKNOX1P55347 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PKNOX1P55347 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PKNOX1P55347 MIR770-201ENST00000390219 98 ntBASIC14.35□□□□□ -0.11
PKNOX1P55347 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
PKNOX1P55347 POM121L8P-201ENST00000417732 1281 ntBASIC14.35□□□□□ -0.11
PKNOX1P55347 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.35□□□□□ -0.11
PKNOX1P55347 POM121L9P-203ENST00000441984 1285 ntBASIC14.35□□□□□ -0.11
PKNOX1P55347 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
PKNOX1P55347 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.35□□□□□ -0.11
PKNOX1P55347 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms