Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL4A4P53420 AC152010.1-201ENST00000415779 2006 ntBASIC15.1■□□□□ 0.01
COL4A4P53420 AC023908.3-201ENST00000564211 3047 ntBASIC15.1■□□□□ 0.01
COL4A4P53420 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL4A4P53420 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC15.09■□□□□ 0.01
COL4A4P53420 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL4A4P53420 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL4A4P53420 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL4A4P53420 AC006987.1-201ENST00000413610 527 ntBASIC15.09■□□□□ 0.01
COL4A4P53420 AC092570.1-201ENST00000414446 469 ntBASIC15.09■□□□□ 0.01
COL4A4P53420 AC104961.1-201ENST00000427605 771 ntBASIC15.09■□□□□ 0.01
COL4A4P53420 STK24P1-201ENST00000455035 1291 ntBASIC15.09■□□□□ 0.01
COL4A4P53420 PFN2-212ENST00000490975 858 ntTSL 4 BASIC15.09■□□□□ 0.01
COL4A4P53420 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC15.09■□□□□ 0.01
COL4A4P53420 AC005740.1-201ENST00000515639 522 ntBASIC15.09■□□□□ 0.01
COL4A4P53420 CASP3-205ENST00000517513 964 ntTSL 5 BASIC15.09■□□□□ 0.01
COL4A4P53420 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC15.09■□□□□ 0.01
COL4A4P53420 AC087203.1-201ENST00000532111 1181 ntBASIC15.09■□□□□ 0.01
COL4A4P53420 AC145285.5-201ENST00000562217 361 ntBASIC15.09■□□□□ 0.01
COL4A4P53420 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC15.09■□□□□ 0.01
COL4A4P53420 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC15.09■□□□□ 0.01
COL4A4P53420 HPX-213ENST00000615166 826 ntTSL 5 BASIC15.09■□□□□ 0.01
COL4A4P53420 AC110057.1-201ENST00000636031 898 ntBASIC15.09■□□□□ 0.01
COL4A4P53420 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
COL4A4P53420 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL4A4P53420 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL4A4P53420 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL4A4P53420 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL4A4P53420 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC15.09■□□□□ 0.01
COL4A4P53420 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
COL4A4P53420 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL4A4P53420 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL4A4P53420 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC15.09■□□□□ 0.01
COL4A4P53420 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL4A4P53420 NHP2P1-201ENST00000335274 462 ntBASIC15.09■□□□□ 0.01
COL4A4P53420 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL4A4P53420 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC15.09■□□□□ 0.01
COL4A4P53420 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
COL4A4P53420 AL157823.1-201ENST00000403727 628 ntBASIC15.09■□□□□ 0.01
COL4A4P53420 CDCA4P4-201ENST00000435216 680 ntBASIC15.09■□□□□ 0.01
COL4A4P53420 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL4A4P53420 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC15.09■□□□□ 0.01
COL4A4P53420 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC15.09■□□□□ 0.01
COL4A4P53420 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC15.09■□□□□ 0.01
COL4A4P53420 DLK1-205ENST00000556051 469 ntTSL 2 BASIC15.09■□□□□ 0.01
COL4A4P53420 EMC4-208ENST00000559078 599 ntTSL 3 BASIC15.09■□□□□ 0.01
COL4A4P53420 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC15.09■□□□□ 0.01
COL4A4P53420 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL4A4P53420 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL4A4P53420 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL4A4P53420 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0.01
COL4A4P53420 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
COL4A4P53420 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC15.08■□□□□ 0.01
COL4A4P53420 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0.01
COL4A4P53420 AC012617.1-204ENST00000586340 2305 ntBASIC15.08■□□□□ 0
COL4A4P53420 TUBB8P4-201ENST00000511806 1324 ntBASIC15.08■□□□□ 0
COL4A4P53420 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL4A4P53420 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL4A4P53420 AC016397.2-201ENST00000624848 1985 ntBASIC15.08■□□□□ 0
COL4A4P53420 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL4A4P53420 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL4A4P53420 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL4A4P53420 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC15.08■□□□□ 0
COL4A4P53420 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
COL4A4P53420 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC15.08■□□□□ 0
COL4A4P53420 OR10N1P-201ENST00000392758 869 ntBASIC15.08■□□□□ 0
COL4A4P53420 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL4A4P53420 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL4A4P53420 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
COL4A4P53420 RNLS-203ENST00000437752 525 ntTSL 2 BASIC15.08■□□□□ 0
COL4A4P53420 AC092903.1-201ENST00000466506 262 ntBASIC15.08■□□□□ 0
COL4A4P53420 SEPHS2P1-201ENST00000511618 1162 ntBASIC15.08■□□□□ 0
COL4A4P53420 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC15.08■□□□□ 0
COL4A4P53420 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC15.08■□□□□ 0
COL4A4P53420 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC15.08■□□□□ 0
COL4A4P53420 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC15.08■□□□□ 0
COL4A4P53420 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC15.08■□□□□ 0
COL4A4P53420 ESR1-214ENST00000638569 132 ntTSL 5 BASIC15.08■□□□□ 0
COL4A4P53420 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
COL4A4P53420 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL4A4P53420 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL4A4P53420 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL4A4P53420 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.08■□□□□ 0
COL4A4P53420 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC15.08■□□□□ 0
COL4A4P53420 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
COL4A4P53420 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.08■□□□□ 0
COL4A4P53420 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
COL4A4P53420 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.08■□□□□ 0
COL4A4P53420 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
COL4A4P53420 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC15.07■□□□□ 0
COL4A4P53420 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC15.07■□□□□ 0
COL4A4P53420 KRT8P43-201ENST00000406052 1458 ntBASIC15.07■□□□□ 0
COL4A4P53420 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL4A4P53420 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC15.07■□□□□ 0
COL4A4P53420 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC15.07■□□□□ 0
COL4A4P53420 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
COL4A4P53420 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.07■□□□□ 0
COL4A4P53420 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
COL4A4P53420 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
COL4A4P53420 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms