Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX2P35548 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX2P35548 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
MSX2P35548 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX2P35548 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC13.96□□□□□ -0.17
MSX2P35548 ADRA2B-201ENST00000620793 3371 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
MSX2P35548 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
MSX2P35548 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX2P35548 AL122018.1-201ENST00000446607 2310 ntBASIC13.96□□□□□ -0.17
MSX2P35548 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC13.96□□□□□ -0.17
MSX2P35548 INCENP-201ENST00000278849 3698 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.17
MSX2P35548 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC13.96□□□□□ -0.17
MSX2P35548 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC13.96□□□□□ -0.17
MSX2P35548 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX2P35548 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX2P35548 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX2P35548 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX2P35548 MIR574-201ENST00000385209 96 ntBASIC13.96□□□□□ -0.17
MSX2P35548 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC13.96□□□□□ -0.17
MSX2P35548 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
MSX2P35548 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC13.96□□□□□ -0.17
MSX2P35548 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC13.96□□□□□ -0.17
MSX2P35548 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC13.96□□□□□ -0.17
MSX2P35548 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC13.96□□□□□ -0.17
MSX2P35548 AC026410.3-201ENST00000514280 936 ntBASIC13.96□□□□□ -0.17
MSX2P35548 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC13.96□□□□□ -0.17
MSX2P35548 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC13.96□□□□□ -0.17
MSX2P35548 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC13.96□□□□□ -0.17
MSX2P35548 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX2P35548 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
MSX2P35548 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
MSX2P35548 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX2P35548 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
MSX2P35548 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
MSX2P35548 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
MSX2P35548 AL031719.1-201ENST00000623365 2587 ntBASIC13.96□□□□□ -0.17
MSX2P35548 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC13.96□□□□□ -0.18
MSX2P35548 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
MSX2P35548 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC13.96□□□□□ -0.18
MSX2P35548 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC13.96□□□□□ -0.18
MSX2P35548 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
MSX2P35548 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
MSX2P35548 DPP8-204ENST00000358939 2822 ntTSL 2 BASIC13.96□□□□□ -0.18
MSX2P35548 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC13.95□□□□□ -0.18
MSX2P35548 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX2P35548 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
MSX2P35548 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX2P35548 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC13.95□□□□□ -0.18
MSX2P35548 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
MSX2P35548 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
MSX2P35548 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
MSX2P35548 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC13.95□□□□□ -0.18
MSX2P35548 RTL5-202ENST00000609883 4105 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
MSX2P35548 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
MSX2P35548 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX2P35548 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX2P35548 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX2P35548 AL139094.1-201ENST00000405549 1188 ntBASIC13.95□□□□□ -0.18
MSX2P35548 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
MSX2P35548 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC13.95□□□□□ -0.18
MSX2P35548 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC13.95□□□□□ -0.18
MSX2P35548 YBX1P5-201ENST00000509441 847 ntBASIC13.95□□□□□ -0.18
MSX2P35548 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
MSX2P35548 KRT18P58-201ENST00000527480 1120 ntBASIC13.95□□□□□ -0.18
MSX2P35548 AC069262.1-201ENST00000539058 672 ntBASIC13.95□□□□□ -0.18
MSX2P35548 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
MSX2P35548 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC13.95□□□□□ -0.18
MSX2P35548 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC13.95□□□□□ -0.18
MSX2P35548 AL391069.4-201ENST00000609583 481 ntBASIC13.95□□□□□ -0.18
MSX2P35548 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC13.95□□□□□ -0.18
MSX2P35548 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC13.95□□□□□ -0.18
MSX2P35548 BDH1-202ENST00000392378 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX2P35548 KHSRPP1-201ENST00000427983 1768 ntBASIC13.95□□□□□ -0.18
MSX2P35548 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
MSX2P35548 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX2P35548 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX2P35548 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX2P35548 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX2P35548 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX2P35548 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX2P35548 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX2P35548 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
MSX2P35548 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC13.95□□□□□ -0.18
MSX2P35548 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC13.95□□□□□ -0.18
MSX2P35548 PPARGC1B-202ENST00000360453 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX2P35548 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX2P35548 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
MSX2P35548 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX2P35548 STX3-207ENST00000633708 3111 ntTSL 5 BASIC13.95□□□□□ -0.18
MSX2P35548 NFKBIZ-202ENST00000326172 3923 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX2P35548 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC13.94□□□□□ -0.18
MSX2P35548 ZFAND3-201ENST00000287218 3366 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 ZNF426-204ENST00000593003 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 CDC20B-203ENST00000381375 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
MSX2P35548 IFT81-202ENST00000361948 3048 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC13.94□□□□□ -0.18
MSX2P35548 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms