Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
USF1P22415 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
USF1P22415 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC12.42□□□□□ -0.42
USF1P22415 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC12.42□□□□□ -0.42
USF1P22415 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
USF1P22415 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
USF1P22415 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
USF1P22415 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
USF1P22415 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC12.42□□□□□ -0.42
USF1P22415 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
USF1P22415 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
USF1P22415 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC12.42□□□□□ -0.42
USF1P22415 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 RN7SKP214-201ENST00000364208 315 ntBASIC12.42□□□□□ -0.42
USF1P22415 RBM38-204ENST00000371219 760 ntTSL 2 BASIC12.42□□□□□ -0.42
USF1P22415 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC12.42□□□□□ -0.42
USF1P22415 AC012441.2-201ENST00000444843 739 ntBASIC12.42□□□□□ -0.42
USF1P22415 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC12.42□□□□□ -0.42
USF1P22415 RPS2P36-201ENST00000456516 831 ntBASIC12.42□□□□□ -0.42
USF1P22415 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC12.42□□□□□ -0.42
USF1P22415 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC12.42□□□□□ -0.42
USF1P22415 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC12.42□□□□□ -0.42
USF1P22415 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC12.42□□□□□ -0.42
USF1P22415 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC12.42□□□□□ -0.42
USF1P22415 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC12.42□□□□□ -0.42
USF1P22415 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC12.42□□□□□ -0.42
USF1P22415 PCBP2-OT1-201ENST00000634357 590 ntBASIC12.42□□□□□ -0.42
USF1P22415 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
USF1P22415 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
USF1P22415 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC12.42□□□□□ -0.42
USF1P22415 BANP-203ENST00000393207 2438 ntTSL 2 BASIC12.42□□□□□ -0.42
USF1P22415 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
USF1P22415 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
USF1P22415 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
USF1P22415 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 PPP1R26P4-201ENST00000619065 3527 ntBASIC12.42□□□□□ -0.42
USF1P22415 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC12.42□□□□□ -0.42
USF1P22415 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC12.42□□□□□ -0.42
USF1P22415 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC12.42□□□□□ -0.42
USF1P22415 LINC00528-201ENST00000600723 2160 ntBASIC12.42□□□□□ -0.42
USF1P22415 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 AC011840.2-201ENST00000563063 1520 ntBASIC12.42□□□□□ -0.42
USF1P22415 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
USF1P22415 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC12.42□□□□□ -0.42
USF1P22415 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC12.42□□□□□ -0.42
USF1P22415 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
USF1P22415 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC12.41□□□□□ -0.42
USF1P22415 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC12.41□□□□□ -0.42
USF1P22415 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC12.41□□□□□ -0.42
USF1P22415 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
USF1P22415 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC12.41□□□□□ -0.42
USF1P22415 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC12.41□□□□□ -0.42
USF1P22415 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
USF1P22415 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC12.41□□□□□ -0.42
USF1P22415 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
USF1P22415 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
USF1P22415 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
USF1P22415 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
USF1P22415 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 AC091046.1-201ENST00000331871 207 ntBASIC12.41□□□□□ -0.42
USF1P22415 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
USF1P22415 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
USF1P22415 HNRNPA1P41-201ENST00000397777 928 ntBASIC12.41□□□□□ -0.42
USF1P22415 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
USF1P22415 E2F3P2-201ENST00000447755 1422 ntBASIC12.41□□□□□ -0.42
USF1P22415 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC12.41□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms