Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AC132192.2-201ENST00000596206 1147 ntBASIC15.32■□□□□ 0.04
APOEP02649 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
APOEP02649 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC15.32■□□□□ 0.04
APOEP02649 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC15.32■□□□□ 0.04
APOEP02649 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
APOEP02649 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
APOEP02649 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
APOEP02649 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
APOEP02649 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
APOEP02649 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
APOEP02649 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC15.32■□□□□ 0.04
APOEP02649 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
APOEP02649 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
APOEP02649 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
APOEP02649 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC15.32■□□□□ 0.04
APOEP02649 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC15.32■□□□□ 0.04
APOEP02649 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
APOEP02649 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
APOEP02649 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
APOEP02649 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
APOEP02649 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
APOEP02649 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
APOEP02649 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC15.32■□□□□ 0.04
APOEP02649 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC15.31■□□□□ 0.04
APOEP02649 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC15.31■□□□□ 0.04
APOEP02649 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
APOEP02649 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
APOEP02649 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.31■□□□□ 0.04
APOEP02649 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
APOEP02649 AC041040.2-201ENST00000622926 2899 ntBASIC15.31■□□□□ 0.04
APOEP02649 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
APOEP02649 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
APOEP02649 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.31■□□□□ 0.04
APOEP02649 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC15.31■□□□□ 0.04
APOEP02649 HNRNPA1P63-201ENST00000427917 963 ntBASIC15.31■□□□□ 0.04
APOEP02649 PTPA-218ENST00000435132 618 ntTSL 2 BASIC15.31■□□□□ 0.04
APOEP02649 FAM58BP-201ENST00000439056 645 ntBASIC15.31■□□□□ 0.04
APOEP02649 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
APOEP02649 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 TPT1P11-201ENST00000458482 498 ntBASIC15.31■□□□□ 0.04
APOEP02649 AC108725.1-201ENST00000495472 409 ntBASIC15.31■□□□□ 0.04
APOEP02649 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC15.31■□□□□ 0.04
APOEP02649 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC15.31■□□□□ 0.04
APOEP02649 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC15.31■□□□□ 0.04
APOEP02649 CD74-212ENST00000524315 584 ntTSL 5 BASIC15.31■□□□□ 0.04
APOEP02649 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC15.31■□□□□ 0.04
APOEP02649 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
APOEP02649 AC009955.4-201ENST00000597192 544 ntBASIC15.31■□□□□ 0.04
APOEP02649 MIR6799-201ENST00000620297 69 ntBASIC15.31■□□□□ 0.04
APOEP02649 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC15.31■□□□□ 0.04
APOEP02649 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC15.31■□□□□ 0.04
APOEP02649 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC15.31■□□□□ 0.04
APOEP02649 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
APOEP02649 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
APOEP02649 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC15.3■□□□□ 0.04
APOEP02649 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
APOEP02649 AC152010.1-201ENST00000415779 2006 ntBASIC15.3■□□□□ 0.04
APOEP02649 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms