Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC15.18■□□□□ 0.02
CCDC188H7C350 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC15.18■□□□□ 0.02
CCDC188H7C350 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC15.18■□□□□ 0.02
CCDC188H7C350 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC188H7C350 AC055876.2-201ENST00000531834 546 ntBASIC15.18■□□□□ 0.02
CCDC188H7C350 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.18■□□□□ 0.02
CCDC188H7C350 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
CCDC188H7C350 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.18■□□□□ 0.02
CCDC188H7C350 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC188H7C350 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC15.18■□□□□ 0.02
CCDC188H7C350 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC15.18■□□□□ 0.02
CCDC188H7C350 MIR8072-201ENST00000614241 80 ntBASIC15.18■□□□□ 0.02
CCDC188H7C350 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC188H7C350 AC005252.2-201ENST00000624630 1141 ntBASIC15.18■□□□□ 0.02
CCDC188H7C350 OS9-218ENST00000551035 2246 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC188H7C350 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC15.18■□□□□ 0.02
CCDC188H7C350 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
CCDC188H7C350 HNRNPA1P48-201ENST00000562726 1377 ntBASIC15.18■□□□□ 0.02
CCDC188H7C350 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
CCDC188H7C350 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
CCDC188H7C350 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC188H7C350 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC188H7C350 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC188H7C350 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC188H7C350 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CCDC188H7C350 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CCDC188H7C350 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC188H7C350 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC188H7C350 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC188H7C350 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC188H7C350 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC188H7C350 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC188H7C350 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC188H7C350 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
CCDC188H7C350 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CCDC188H7C350 KRT8P28-201ENST00000433288 1390 ntBASIC15.17■□□□□ 0.02
CCDC188H7C350 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC188H7C350 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC188H7C350 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC188H7C350 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC188H7C350 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC15.17■□□□□ 0.02
CCDC188H7C350 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CCDC188H7C350 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC188H7C350 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC15.17■□□□□ 0.02
CCDC188H7C350 AP000347.1-202ENST00000435868 847 ntBASIC15.17■□□□□ 0.02
CCDC188H7C350 AC245100.3-201ENST00000441281 285 ntBASIC15.17■□□□□ 0.02
CCDC188H7C350 MYCLP2-201ENST00000449268 967 ntBASIC15.17■□□□□ 0.02
CCDC188H7C350 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC15.17■□□□□ 0.02
CCDC188H7C350 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC188H7C350 AC093004.1-201ENST00000508850 424 ntBASIC15.17■□□□□ 0.02
CCDC188H7C350 REEP4-207ENST00000523293 913 ntTSL 3 BASIC15.17■□□□□ 0.02
CCDC188H7C350 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC15.17■□□□□ 0.02
CCDC188H7C350 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC15.17■□□□□ 0.02
CCDC188H7C350 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC188H7C350 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC188H7C350 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC188H7C350 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC188H7C350 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC188H7C350 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC188H7C350 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC188H7C350 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC188H7C350 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC188H7C350 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC188H7C350 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CCDC188H7C350 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC188H7C350 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC188H7C350 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC15.17■□□□□ 0.02
CCDC188H7C350 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC188H7C350 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC188H7C350 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CCDC188H7C350 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC188H7C350 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CCDC188H7C350 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC188H7C350 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
CCDC188H7C350 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC188H7C350 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
CCDC188H7C350 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC188H7C350 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC188H7C350 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC188H7C350 STK3-218ENST00000617590 2485 ntTSL 5 BASIC15.16■□□□□ 0.02
CCDC188H7C350 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC188H7C350 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CCDC188H7C350 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC188H7C350 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.16■□□□□ 0.02
CCDC188H7C350 AK2P2-201ENST00000439142 405 ntBASIC15.16■□□□□ 0.02
CCDC188H7C350 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC188H7C350 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC15.16■□□□□ 0.02
CCDC188H7C350 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
CCDC188H7C350 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms