Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 PFAS-212ENST00000625942 396 ntTSL 5 BASIC14.01□□□□□ -0.17
VPS29Q9UBQ0 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC14.01□□□□□ -0.17
VPS29Q9UBQ0 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
VPS29Q9UBQ0 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS29Q9UBQ0 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS29Q9UBQ0 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS29Q9UBQ0 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
VPS29Q9UBQ0 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
VPS29Q9UBQ0 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS29Q9UBQ0 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC14.01□□□□□ -0.17
VPS29Q9UBQ0 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
VPS29Q9UBQ0 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
VPS29Q9UBQ0 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
VPS29Q9UBQ0 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC14.01□□□□□ -0.17
VPS29Q9UBQ0 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS29Q9UBQ0 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS29Q9UBQ0 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS29Q9UBQ0 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
VPS29Q9UBQ0 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS29Q9UBQ0 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.01□□□□□ -0.17
VPS29Q9UBQ0 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS29Q9UBQ0 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
VPS29Q9UBQ0 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
VPS29Q9UBQ0 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC14□□□□□ -0.17
VPS29Q9UBQ0 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
VPS29Q9UBQ0 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC14□□□□□ -0.17
VPS29Q9UBQ0 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14□□□□□ -0.17
VPS29Q9UBQ0 AC090643.2-201ENST00000623442 2029 ntBASIC14□□□□□ -0.17
VPS29Q9UBQ0 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC14□□□□□ -0.17
VPS29Q9UBQ0 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
VPS29Q9UBQ0 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC14□□□□□ -0.17
VPS29Q9UBQ0 CTBP1-AS2-206ENST00000581398 5652 ntBASIC14□□□□□ -0.17
VPS29Q9UBQ0 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC14□□□□□ -0.17
VPS29Q9UBQ0 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 CALY-203ENST00000368558 825 ntTSL 5 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 MIR1202-201ENST00000408529 83 ntBASIC14□□□□□ -0.17
VPS29Q9UBQ0 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 AL161932.2-201ENST00000435436 679 ntBASIC14□□□□□ -0.17
VPS29Q9UBQ0 AL355994.2-201ENST00000447882 704 ntBASIC14□□□□□ -0.17
VPS29Q9UBQ0 KRT17P7-201ENST00000451704 1104 ntBASIC14□□□□□ -0.17
VPS29Q9UBQ0 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 TAF8-206ENST00000472818 719 ntTSL 2 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC14□□□□□ -0.17
VPS29Q9UBQ0 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 CECR7-204ENST00000609932 568 ntTSL 2 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC14□□□□□ -0.17
VPS29Q9UBQ0 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
VPS29Q9UBQ0 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
VPS29Q9UBQ0 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
VPS29Q9UBQ0 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
VPS29Q9UBQ0 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14□□□□□ -0.17
VPS29Q9UBQ0 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
VPS29Q9UBQ0 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
VPS29Q9UBQ0 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 AC126335.2-201ENST00000623362 4637 ntBASIC14□□□□□ -0.17
VPS29Q9UBQ0 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
VPS29Q9UBQ0 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC14□□□□□ -0.17
VPS29Q9UBQ0 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
VPS29Q9UBQ0 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 DDC-213ENST00000617822 1809 ntTSL 3 BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 TUBB8P4-201ENST00000511806 1324 ntBASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS29Q9UBQ0 EDF1-203ENST00000371649 790 ntTSL 2 BASIC13.99□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms