Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 RPSAP31-201ENST00000416648 895 ntBASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 AC073869.2-201ENST00000417338 1026 ntBASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 CFL1-206ENST00000527344 962 ntTSL 2 BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC15.41■□□□□ 0.06
PAAF1Q9BRP4 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 DNAJB1P1-201ENST00000429417 1024 ntBASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 AP002803.1-201ENST00000528836 498 ntBASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 AC140658.4-201ENST00000561990 352 ntBASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 AC104506.1-201ENST00000609247 429 ntBASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 RN7SL736P-201ENST00000613111 269 ntBASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 AC064801.2-201ENST00000625052 1303 ntBASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC15.4■□□□□ 0.06
PAAF1Q9BRP4 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 CCT8L1P-201ENST00000465400 1674 ntBASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PAAF1Q9BRP4 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms