Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 ZCCHC9-201ENST00000254037 4606 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 Z82170.1-201ENST00000625081 3192 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AL133267.1-201ENST00000398220 340 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AC090164.2-201ENST00000611487 516 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 VASH2-203ENST00000366965 3572 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 PFN2-202ENST00000423691 911 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 AC069218.1-201ENST00000435269 762 ntBASIC4.56□□□□□ -1.68
SYNE1Q8NF91 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 ENPP7P14-201ENST00000621765 1040 ntBASIC4.56□□□□□ -1.68
SYNE1Q8NF91 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 TUBGCP5-208ENST00000620435 3342 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 PIK3R6-204ENST00000619866 3041 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 AL365203.3-201ENST00000609742 2057 ntBASIC4.56□□□□□ -1.68
SYNE1Q8NF91 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 SORBS3-201ENST00000240123 3459 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 MIER1-207ENST00000371018 3875 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 LINC02188-202ENST00000569740 3775 ntTSL 4 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 RPL17P11-201ENST00000417593 544 ntBASIC4.56□□□□□ -1.68
SYNE1Q8NF91 RPL13AP19-201ENST00000434320 584 ntBASIC4.56□□□□□ -1.68
SYNE1Q8NF91 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 FES-203ENST00000394302 2133 ntTSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 FBF1-210ENST00000592193 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 E2F3P2-201ENST00000447755 1422 ntBASIC4.56□□□□□ -1.68
SYNE1Q8NF91 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 SPIN3-201ENST00000374919 4642 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 KLF2P1-201ENST00000447438 1042 ntBASIC4.56□□□□□ -1.68
SYNE1Q8NF91 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 AL161670.2-201ENST00000557650 1227 ntBASIC4.56□□□□□ -1.68
SYNE1Q8NF91 EID1-202ENST00000560490 584 ntTSL 3 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 WDR7-208ENST00000589935 544 ntTSL 4 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 MSH6-214ENST00000616033 3429 ntTSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 VILL-201ENST00000283713 2970 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms