Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 AL590440.2-201ENST00000641973 1595 ntBASIC13.54□□□□□ -0.24
NUP54Q7Z3B4 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 COCH-203ENST00000460581 2688 ntTSL 2 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 RPS3-201ENST00000278572 907 ntTSL 3 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 TUBB8P8-201ENST00000458717 1058 ntBASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 AC022447.6-201ENST00000515522 438 ntBASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 USB1-203ENST00000539737 1212 ntTSL 2 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 PRKN-211ENST00000615065 261 ntTSL 5 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 AL162426.1-201ENST00000624141 743 ntBASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 E2F3P2-201ENST00000447755 1422 ntBASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 AC009093.10-201ENST00000641956 1442 ntBASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 KHSRPP1-201ENST00000427983 1768 ntBASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NUP54Q7Z3B4 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
NUP54Q7Z3B4 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.24
NUP54Q7Z3B4 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.24
NUP54Q7Z3B4 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
NUP54Q7Z3B4 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
NUP54Q7Z3B4 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
NUP54Q7Z3B4 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
NUP54Q7Z3B4 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
NUP54Q7Z3B4 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
NUP54Q7Z3B4 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
NUP54Q7Z3B4 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC13.52□□□□□ -0.24
NUP54Q7Z3B4 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC13.52□□□□□ -0.24
NUP54Q7Z3B4 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
NUP54Q7Z3B4 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 HNRNPA1P63-201ENST00000427917 963 ntBASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 AC007274.1-201ENST00000439805 662 ntBASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 AC012441.2-201ENST00000444843 739 ntBASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 AC021723.1-201ENST00000486306 515 ntBASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 AC009884.2-201ENST00000603110 324 ntBASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 KRT8P29-201ENST00000420409 1371 ntBASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
NUP54Q7Z3B4 MIR193BHG-211ENST00000641433 5365 ntBASIC13.52□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms