Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
RNF20Q5VTR2 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 AK6-201ENST00000380818 1183 ntTSL 2 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 AL161932.2-201ENST00000435436 679 ntBASIC17.44■□□□□ 0.38
RNF20Q5VTR2 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 HIST2H2BB-201ENST00000449108 381 ntBASIC17.44■□□□□ 0.38
RNF20Q5VTR2 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 IGHVIII-5-2-201ENST00000522505 261 ntBASIC17.44■□□□□ 0.38
RNF20Q5VTR2 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
RNF20Q5VTR2 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 GAS5-209ENST00000430245 723 ntTSL 3 BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 NAA50-208ENST00000497255 789 ntTSL 5 BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 AC104989.1-201ENST00000519711 778 ntBASIC17.43■□□□□ 0.38
RNF20Q5VTR2 DUX4L46-201ENST00000566845 751 ntBASIC17.43■□□□□ 0.38
RNF20Q5VTR2 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 MST1P2-201ENST00000457982 2291 ntBASIC17.43■□□□□ 0.38
RNF20Q5VTR2 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms