Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
PRKDCP78527 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC10.06□□□□□ -0.8
PRKDCP78527 LCN12-202ENST00000371633 579 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC10.05□□□□□ -0.8
PRKDCP78527 GRP-202ENST00000420468 579 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 GAPDHP65-201ENST00000425487 1006 ntBASIC10.05□□□□□ -0.8
PRKDCP78527 AL359915.1-201ENST00000457719 898 ntTSL 2 BASIC10.05□□□□□ -0.8
PRKDCP78527 RN7SL22P-201ENST00000471800 269 ntBASIC10.05□□□□□ -0.8
PRKDCP78527 CST7-201ENST00000480798 930 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 AC022784.6-203ENST00000520255 863 ntTSL 3 BASIC10.05□□□□□ -0.8
PRKDCP78527 SMCO4-202ENST00000525141 889 ntAPPRIS P1 TSL 2 BASIC10.05□□□□□ -0.8
PRKDCP78527 WNT5B-206ENST00000542408 508 ntTSL 3 BASIC10.05□□□□□ -0.8
PRKDCP78527 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC10.05□□□□□ -0.8
PRKDCP78527 AL352977.2-201ENST00000557101 547 ntTSL 4 BASIC10.05□□□□□ -0.8
PRKDCP78527 BMS1P8-203ENST00000567036 614 ntTSL 3 BASIC10.05□□□□□ -0.8
PRKDCP78527 AL139220.2-222ENST00000627999 756 ntTSL 5 BASIC10.05□□□□□ -0.8
PRKDCP78527 AC116631.1-201ENST00000640685 576 ntTSL 5 BASIC10.05□□□□□ -0.8
PRKDCP78527 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC10.05□□□□□ -0.8
PRKDCP78527 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC10.05□□□□□ -0.8
PRKDCP78527 PIN4-203ENST00000373669 1321 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 OR7E155P-201ENST00000412208 1014 ntBASIC10.05□□□□□ -0.8
PRKDCP78527 AL161932.2-201ENST00000435436 679 ntBASIC10.05□□□□□ -0.8
PRKDCP78527 AC092865.2-201ENST00000439409 971 ntBASIC10.05□□□□□ -0.8
PRKDCP78527 AP005273.1-201ENST00000444862 522 ntTSL 3 BASIC10.05□□□□□ -0.8
PRKDCP78527 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC10.05□□□□□ -0.8
PRKDCP78527 AC112250.1-201ENST00000504640 745 ntBASIC10.05□□□□□ -0.8
PRKDCP78527 AC090589.3-201ENST00000524412 574 ntTSL 5 BASIC10.05□□□□□ -0.8
PRKDCP78527 MT1L-201ENST00000565768 411 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 AC109597.2-201ENST00000569407 927 ntTSL 3 BASIC10.05□□□□□ -0.8
PRKDCP78527 ARL17B-207ENST00000575960 731 ntAPPRIS ALT2 TSL 3 BASIC10.05□□□□□ -0.8
PRKDCP78527 LINC00869-208ENST00000621156 737 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 AC112702.1-201ENST00000623712 366 ntBASIC10.05□□□□□ -0.8
PRKDCP78527 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC10.05□□□□□ -0.8
PRKDCP78527 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 PPP4R1L-201ENST00000244070 1474 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC10.05□□□□□ -0.8
PRKDCP78527 TRAPPC4-214ENST00000533632 1759 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC10.05□□□□□ -0.8
PRKDCP78527 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC10.05□□□□□ -0.8
PRKDCP78527 SALL4P6-201ENST00000429385 1691 ntBASIC10.05□□□□□ -0.8
PRKDCP78527 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 BNIP1-202ENST00000351486 1184 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 C9orf24-202ENST00000379124 648 ntTSL 3 BASIC10.05□□□□□ -0.8
PRKDCP78527 RPL3P9-201ENST00000463217 1183 ntBASIC10.05□□□□□ -0.8
PRKDCP78527 TRAPPC4-212ENST00000533058 1209 ntTSL 2 BASIC10.05□□□□□ -0.8
PRKDCP78527 AC005609.1-201ENST00000625195 617 ntTSL 5 BASIC10.05□□□□□ -0.8
PRKDCP78527 BIN3-212ENST00000640731 450 ntTSL 5 BASIC10.05□□□□□ -0.8
PRKDCP78527 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
PRKDCP78527 CNBP-207ENST00000502976 1626 ntAPPRIS ALT1 TSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
PRKDCP78527 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC10.05□□□□□ -0.8
PRKDCP78527 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC10.05□□□□□ -0.8
PRKDCP78527 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC10.05□□□□□ -0.8
PRKDCP78527 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 RBP1-201ENST00000232219 898 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 AL391903.1-201ENST00000407513 365 ntBASIC10.05□□□□□ -0.8
PRKDCP78527 AC116347.1-201ENST00000442824 720 ntBASIC10.05□□□□□ -0.8
PRKDCP78527 AC096713.1-201ENST00000514650 978 ntBASIC10.05□□□□□ -0.8
PRKDCP78527 AP001107.9-202ENST00000531602 613 ntTSL 2 BASIC10.05□□□□□ -0.8
PRKDCP78527 RAB11B-205ENST00000601897 577 ntTSL 3 BASIC10.05□□□□□ -0.8
PRKDCP78527 RBP1-206ENST00000617459 667 ntTSL 2 BASIC10.05□□□□□ -0.8
PRKDCP78527 AL591471.1-201ENST00000621855 229 ntBASIC10.05□□□□□ -0.8
PRKDCP78527 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
PRKDCP78527 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
PRKDCP78527 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
PRKDCP78527 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC10.04□□□□□ -0.8
PRKDCP78527 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC10.04□□□□□ -0.8
PRKDCP78527 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
PRKDCP78527 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
PRKDCP78527 LYG2-201ENST00000333017 862 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
PRKDCP78527 AL356289.1-203ENST00000439795 789 ntTSL 5 BASIC10.04□□□□□ -0.8
PRKDCP78527 PRSS46-201ENST00000463091 982 ntAPPRIS P1 TSL 4 BASIC10.04□□□□□ -0.8
PRKDCP78527 NDUFB2P1-201ENST00000506966 295 ntBASIC10.04□□□□□ -0.8
PRKDCP78527 TSPAN9-IT1-201ENST00000539784 562 ntTSL 4 BASIC10.04□□□□□ -0.8
PRKDCP78527 AC025265.3-201ENST00000550175 468 ntTSL 3 BASIC10.04□□□□□ -0.8
PRKDCP78527 COX14-204ENST00000550654 580 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
PRKDCP78527 AL031058.1-201ENST00000561592 888 ntBASIC10.04□□□□□ -0.8
PRKDCP78527 AL390726.3-201ENST00000567428 635 ntTSL 5 BASIC10.04□□□□□ -0.8
PRKDCP78527 AP001505.1-201ENST00000569966 824 ntBASIC10.04□□□□□ -0.8
PRKDCP78527 ALOX12P1-201ENST00000579299 1229 ntBASIC10.04□□□□□ -0.8
PRKDCP78527 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
PRKDCP78527 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
PRKDCP78527 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
PRKDCP78527 MROH4P-201ENST00000431302 1578 ntBASIC10.04□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms