Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 AZGP1P1-201ENST00000411909 902 ntBASIC10.35□□□□□ -0.75
CKS1BP61024 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC10.35□□□□□ -0.75
CKS1BP61024 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC10.35□□□□□ -0.75
CKS1BP61024 KRT18P3-201ENST00000451602 1288 ntBASIC10.35□□□□□ -0.75
CKS1BP61024 TIMM8BP1-201ENST00000452384 211 ntBASIC10.35□□□□□ -0.75
CKS1BP61024 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC10.35□□□□□ -0.75
CKS1BP61024 RNA5SP419-201ENST00000515908 135 ntBASIC10.35□□□□□ -0.75
CKS1BP61024 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC10.35□□□□□ -0.75
CKS1BP61024 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC10.35□□□□□ -0.75
CKS1BP61024 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC10.35□□□□□ -0.75
CKS1BP61024 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC10.35□□□□□ -0.75
CKS1BP61024 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC10.35□□□□□ -0.75
CKS1BP61024 AC097359.3-201ENST00000603982 1210 ntBASIC10.35□□□□□ -0.75
CKS1BP61024 AC027601.4-201ENST00000611259 610 ntBASIC10.35□□□□□ -0.75
CKS1BP61024 AC055717.3-201ENST00000622967 595 ntBASIC10.35□□□□□ -0.75
CKS1BP61024 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 OR1I1-202ENST00000641398 5984 ntAPPRIS P1 BASIC10.35□□□□□ -0.75
CKS1BP61024 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC10.35□□□□□ -0.75
CKS1BP61024 GRM4-204ENST00000535756 6670 ntTSL 5 BASIC10.35□□□□□ -0.75
CKS1BP61024 EGFR-AS1-201ENST00000442411 2806 ntTSL 2 BASIC10.35□□□□□ -0.75
CKS1BP61024 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 CAMK2A-201ENST00000348628 5322 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 PTPRN-202ENST00000409251 3622 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC10.35□□□□□ -0.75
CKS1BP61024 STXBP5L-201ENST00000273666 9496 ntAPPRIS P3 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 RNF150-206ENST00000515673 9805 ntAPPRIS P1 TSL 5 BASIC10.35□□□□□ -0.75
CKS1BP61024 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC10.35□□□□□ -0.75
CKS1BP61024 VAMP1-201ENST00000361716 3449 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 DYSF-208ENST00000410020 6657 ntAPPRIS ALT2 TSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 GREB1-206ENST00000396123 5296 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
CKS1BP61024 KLB-201ENST00000257408 6082 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC10.34□□□□□ -0.75
CKS1BP61024 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC10.34□□□□□ -0.75
CKS1BP61024 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 AMDHD2-202ENST00000302956 3273 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC10.34□□□□□ -0.75
CKS1BP61024 GPR179-203ENST00000616987 7980 ntAPPRIS P2 TSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 CPA5-208ENST00000485477 2573 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 F2R-201ENST00000319211 3821 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 BDH1-202ENST00000392378 3455 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 IKZF1-211ENST00000440768 5511 ntTSL 5 BASIC10.34□□□□□ -0.75
CKS1BP61024 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 PRKCG-201ENST00000263431 3133 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC10.34□□□□□ -0.75
CKS1BP61024 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 PTPRG-201ENST00000295874 4650 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC10.34□□□□□ -0.75
CKS1BP61024 BCL2L1-201ENST00000307677 2610 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 AC239809.3-201ENST00000599640 4266 ntTSL 5 BASIC10.34□□□□□ -0.75
CKS1BP61024 RPS19-201ENST00000221975 500 ntTSL 3 BASIC10.34□□□□□ -0.75
CKS1BP61024 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC10.34□□□□□ -0.75
CKS1BP61024 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 MIR346-201ENST00000362234 95 ntBASIC10.34□□□□□ -0.75
CKS1BP61024 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 FO393414.2-201ENST00000405153 598 ntBASIC10.34□□□□□ -0.75
CKS1BP61024 LBH-204ENST00000406087 559 ntTSL 4 BASIC10.34□□□□□ -0.75
CKS1BP61024 SPCS2P4-201ENST00000436160 681 ntBASIC10.34□□□□□ -0.75
CKS1BP61024 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC10.34□□□□□ -0.75
CKS1BP61024 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC10.34□□□□□ -0.75
CKS1BP61024 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC10.34□□□□□ -0.75
CKS1BP61024 AC079140.1-201ENST00000508039 487 ntBASIC10.34□□□□□ -0.75
CKS1BP61024 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC10.34□□□□□ -0.75
CKS1BP61024 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC10.34□□□□□ -0.75
CKS1BP61024 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC10.34□□□□□ -0.75
CKS1BP61024 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC10.34□□□□□ -0.75
CKS1BP61024 SLC25A6P4-201ENST00000586535 553 ntBASIC10.34□□□□□ -0.75
CKS1BP61024 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC10.34□□□□□ -0.75
CKS1BP61024 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 EGFLAM-204ENST00000397202 2398 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 RAP1A-202ENST00000369709 5024 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC10.34□□□□□ -0.75
CKS1BP61024 NPAP1-201ENST00000329468 7526 ntAPPRIS P1 BASIC10.34□□□□□ -0.75
CKS1BP61024 DENND4C-205ENST00000434457 6718 ntTSL 5 BASIC10.34□□□□□ -0.75
CKS1BP61024 TRMT61A-202ENST00000389749 3229 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC10.34□□□□□ -0.75
CKS1BP61024 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC10.34□□□□□ -0.75
CKS1BP61024 TMEM26-202ENST00000399298 5151 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CKS1BP61024 PAX8-203ENST00000348715 3966 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms