Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC14.22□□□□□ -0.13
HNF4AP41235 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.22□□□□□ -0.13
HNF4AP41235 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.22□□□□□ -0.13
HNF4AP41235 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC14.22□□□□□ -0.13
HNF4AP41235 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
HNF4AP41235 AHCYP2-201ENST00000430630 1300 ntBASIC14.22□□□□□ -0.13
HNF4AP41235 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC14.22□□□□□ -0.13
HNF4AP41235 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 LINC01230-201ENST00000625222 3017 ntBASIC14.22□□□□□ -0.13
HNF4AP41235 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.22□□□□□ -0.13
HNF4AP41235 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC14.22□□□□□ -0.13
HNF4AP41235 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
HNF4AP41235 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC14.22□□□□□ -0.13
HNF4AP41235 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 AC006001.1-201ENST00000325130 474 ntBASIC14.22□□□□□ -0.13
HNF4AP41235 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC14.22□□□□□ -0.13
HNF4AP41235 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC14.22□□□□□ -0.13
HNF4AP41235 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 COX5BP1-201ENST00000507622 393 ntBASIC14.22□□□□□ -0.13
HNF4AP41235 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC14.22□□□□□ -0.13
HNF4AP41235 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC14.22□□□□□ -0.13
HNF4AP41235 AP000812.2-201ENST00000538934 718 ntBASIC14.22□□□□□ -0.13
HNF4AP41235 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC14.22□□□□□ -0.13
HNF4AP41235 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.22□□□□□ -0.13
HNF4AP41235 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
HNF4AP41235 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC14.22□□□□□ -0.13
HNF4AP41235 AC017083.2-201ENST00000608069 979 ntBASIC14.22□□□□□ -0.13
HNF4AP41235 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
HNF4AP41235 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
HNF4AP41235 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC14.22□□□□□ -0.13
HNF4AP41235 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
HNF4AP41235 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
HNF4AP41235 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
HNF4AP41235 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC14.21□□□□□ -0.13
HNF4AP41235 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.21□□□□□ -0.13
HNF4AP41235 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC14.21□□□□□ -0.13
HNF4AP41235 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.21□□□□□ -0.13
HNF4AP41235 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
HNF4AP41235 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.21□□□□□ -0.13
HNF4AP41235 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HNF4AP41235 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HNF4AP41235 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
HNF4AP41235 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
HNF4AP41235 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.21□□□□□ -0.13
HNF4AP41235 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
HNF4AP41235 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
HNF4AP41235 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC14.21□□□□□ -0.13
HNF4AP41235 KRT8P4-201ENST00000509735 1454 ntBASIC14.21□□□□□ -0.13
HNF4AP41235 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HNF4AP41235 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
HNF4AP41235 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HNF4AP41235 OR8S1-201ENST00000310194 1080 ntBASIC14.21□□□□□ -0.13
HNF4AP41235 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HNF4AP41235 SNX21-203ENST00000372541 771 ntTSL 2 BASIC14.21□□□□□ -0.13
HNF4AP41235 GK-202ENST00000378941 458 ntTSL 3 BASIC14.21□□□□□ -0.13
HNF4AP41235 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HNF4AP41235 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HNF4AP41235 AC022210.1-201ENST00000449856 793 ntBASIC14.21□□□□□ -0.13
HNF4AP41235 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HNF4AP41235 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC14.21□□□□□ -0.13
HNF4AP41235 AP003171.2-201ENST00000528208 925 ntBASIC14.21□□□□□ -0.13
HNF4AP41235 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
HNF4AP41235 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
HNF4AP41235 MIR4683-201ENST00000579659 81 ntBASIC14.21□□□□□ -0.13
HNF4AP41235 RN7SL713P-201ENST00000582127 302 ntBASIC14.21□□□□□ -0.13
HNF4AP41235 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC14.21□□□□□ -0.13
HNF4AP41235 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC14.21□□□□□ -0.13
HNF4AP41235 AC008825.2-201ENST00000603374 718 ntBASIC14.21□□□□□ -0.13
HNF4AP41235 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC14.21□□□□□ -0.13
HNF4AP41235 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HNF4AP41235 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HNF4AP41235 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
HNF4AP41235 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
HNF4AP41235 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
HNF4AP41235 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HNF4AP41235 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HNF4AP41235 ADAMTS7P1-201ENST00000613213 4793 ntBASIC14.21□□□□□ -0.13
HNF4AP41235 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms