Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC23.56■■□□□ 1.36
CUX1P39880 RPSAP12-201ENST00000435879 888 ntBASIC23.56■■□□□ 1.36
CUX1P39880 AC133141.1-201ENST00000443015 339 ntBASIC23.56■■□□□ 1.36
CUX1P39880 HNRNPA1P56-201ENST00000505767 954 ntBASIC23.56■■□□□ 1.36
CUX1P39880 AC078814.4-201ENST00000546650 327 ntBASIC23.56■■□□□ 1.36
CUX1P39880 BMF-206ENST00000558774 671 ntTSL 3 BASIC23.56■■□□□ 1.36
CUX1P39880 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC23.56■■□□□ 1.36
CUX1P39880 AC006116.2-201ENST00000589958 988 ntBASIC23.56■■□□□ 1.36
CUX1P39880 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC23.56■■□□□ 1.36
CUX1P39880 KF455155.1-201ENST00000604493 303 ntBASIC23.56■■□□□ 1.36
CUX1P39880 MIR8071-1-201ENST00000616769 65 ntBASIC23.56■■□□□ 1.36
CUX1P39880 MIR8071-2-201ENST00000616772 65 ntBASIC23.56■■□□□ 1.36
CUX1P39880 Z98885.3-201ENST00000624882 1757 ntBASIC23.56■■□□□ 1.36
CUX1P39880 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CUX1P39880 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
CUX1P39880 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CUX1P39880 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CUX1P39880 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
CUX1P39880 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC23.56■■□□□ 1.36
CUX1P39880 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CUX1P39880 DDC-204ENST00000426377 1700 ntTSL 3 BASIC23.56■■□□□ 1.36
CUX1P39880 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
CUX1P39880 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CUX1P39880 AC020931.1-201ENST00000589622 1346 ntBASIC23.56■■□□□ 1.36
CUX1P39880 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CUX1P39880 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CUX1P39880 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
CUX1P39880 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
CUX1P39880 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CUX1P39880 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CUX1P39880 AC005722.1-201ENST00000431878 964 ntBASIC23.55■■□□□ 1.36
CUX1P39880 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC23.55■■□□□ 1.36
CUX1P39880 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC23.55■■□□□ 1.36
CUX1P39880 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC23.55■■□□□ 1.36
CUX1P39880 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC23.55■■□□□ 1.36
CUX1P39880 AC020904.3-201ENST00000624199 442 ntBASIC23.55■■□□□ 1.36
CUX1P39880 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC23.55■■□□□ 1.36
CUX1P39880 CICP14-201ENST00000629111 2732 ntBASIC23.55■■□□□ 1.36
CUX1P39880 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
CUX1P39880 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
CUX1P39880 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CUX1P39880 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CUX1P39880 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
CUX1P39880 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC23.55■■□□□ 1.36
CUX1P39880 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CUX1P39880 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CUX1P39880 AC023157.3-201ENST00000619086 2088 ntBASIC23.54■■□□□ 1.36
CUX1P39880 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC23.54■■□□□ 1.36
CUX1P39880 USP35-204ENST00000530267 2419 ntTSL 2 BASIC23.54■■□□□ 1.36
CUX1P39880 USP17L6P-201ENST00000382470 1197 ntBASIC23.54■■□□□ 1.36
CUX1P39880 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC23.54■■□□□ 1.36
CUX1P39880 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC23.54■■□□□ 1.36
CUX1P39880 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CUX1P39880 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC23.54■■□□□ 1.36
CUX1P39880 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC23.54■■□□□ 1.36
CUX1P39880 KRT8P34-201ENST00000577607 1044 ntBASIC23.54■■□□□ 1.36
CUX1P39880 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC23.54■■□□□ 1.36
CUX1P39880 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CUX1P39880 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
CUX1P39880 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC23.54■■□□□ 1.36
CUX1P39880 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC23.54■■□□□ 1.36
CUX1P39880 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CUX1P39880 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CUX1P39880 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CUX1P39880 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CUX1P39880 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CUX1P39880 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CUX1P39880 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CUX1P39880 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC23.54■■□□□ 1.36
CUX1P39880 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC23.54■■□□□ 1.36
CUX1P39880 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC23.54■■□□□ 1.36
CUX1P39880 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC23.54■■□□□ 1.36
CUX1P39880 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
CUX1P39880 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
CUX1P39880 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC23.54■■□□□ 1.36
CUX1P39880 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC23.54■■□□□ 1.36
CUX1P39880 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CUX1P39880 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC23.54■■□□□ 1.36
CUX1P39880 FAM187B2P-201ENST00000577135 713 ntBASIC23.54■■□□□ 1.36
CUX1P39880 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CUX1P39880 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC23.53■■□□□ 1.36
CUX1P39880 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.36
CUX1P39880 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC23.53■■□□□ 1.36
CUX1P39880 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CUX1P39880 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC23.53■■□□□ 1.36
CUX1P39880 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC23.53■■□□□ 1.36
CUX1P39880 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC23.53■■□□□ 1.36
CUX1P39880 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CUX1P39880 FAM226B-201ENST00000602508 1490 ntBASIC23.53■■□□□ 1.36
CUX1P39880 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CUX1P39880 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CUX1P39880 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
CUX1P39880 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CUX1P39880 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CUX1P39880 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CUX1P39880 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CUX1P39880 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC23.53■■□□□ 1.36
CUX1P39880 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC23.53■■□□□ 1.36
CUX1P39880 HMGA1P1-201ENST00000415560 1062 ntBASIC23.53■■□□□ 1.36
CUX1P39880 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC23.53■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms