Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.33■□□□□ 0.2
CIITAP33076 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CIITAP33076 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CIITAP33076 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC16.32■□□□□ 0.2
CIITAP33076 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CIITAP33076 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CIITAP33076 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CIITAP33076 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CIITAP33076 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CIITAP33076 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
CIITAP33076 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CIITAP33076 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CIITAP33076 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC16.32■□□□□ 0.2
CIITAP33076 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
CIITAP33076 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CIITAP33076 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CIITAP33076 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC16.32■□□□□ 0.2
CIITAP33076 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CIITAP33076 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC16.32■□□□□ 0.2
CIITAP33076 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC16.32■□□□□ 0.2
CIITAP33076 RHEB-207ENST00000496004 744 ntTSL 2 BASIC16.32■□□□□ 0.2
CIITAP33076 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC16.32■□□□□ 0.2
CIITAP33076 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC16.32■□□□□ 0.2
CIITAP33076 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC16.32■□□□□ 0.2
CIITAP33076 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CIITAP33076 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC16.32■□□□□ 0.2
CIITAP33076 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CIITAP33076 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC16.32■□□□□ 0.2
CIITAP33076 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
CIITAP33076 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CIITAP33076 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CIITAP33076 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CIITAP33076 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CIITAP33076 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CIITAP33076 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CIITAP33076 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CIITAP33076 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
CIITAP33076 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC16.31■□□□□ 0.2
CIITAP33076 PCDHA3-202ENST00000532566 4594 ntBASIC16.31■□□□□ 0.2
CIITAP33076 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CIITAP33076 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CIITAP33076 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC16.31■□□□□ 0.2
CIITAP33076 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC16.31■□□□□ 0.2
CIITAP33076 AL022313.4-201ENST00000562756 2046 ntBASIC16.31■□□□□ 0.2
CIITAP33076 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC16.31■□□□□ 0.2
CIITAP33076 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CIITAP33076 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CIITAP33076 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CIITAP33076 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CIITAP33076 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
CIITAP33076 CCT8L1P-201ENST00000465400 1674 ntBASIC16.31■□□□□ 0.2
CIITAP33076 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CIITAP33076 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CIITAP33076 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CIITAP33076 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CIITAP33076 USP4-203ENST00000415188 1454 ntTSL 3 BASIC16.31■□□□□ 0.2
CIITAP33076 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CIITAP33076 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CIITAP33076 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CIITAP33076 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CIITAP33076 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CIITAP33076 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CIITAP33076 BCYRN1-201ENST00000418539 200 ntBASIC16.31■□□□□ 0.2
CIITAP33076 PDIA3P2-201ENST00000428073 158 ntBASIC16.31■□□□□ 0.2
CIITAP33076 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC16.31■□□□□ 0.2
CIITAP33076 MSRA-203ENST00000441698 788 ntTSL 2 BASIC16.31■□□□□ 0.2
CIITAP33076 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC16.31■□□□□ 0.2
CIITAP33076 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC16.31■□□□□ 0.2
CIITAP33076 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CIITAP33076 AC090857.1-201ENST00000527400 390 ntBASIC16.31■□□□□ 0.2
CIITAP33076 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC16.31■□□□□ 0.2
CIITAP33076 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC16.31■□□□□ 0.2
CIITAP33076 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC16.31■□□□□ 0.2
CIITAP33076 RN7SL574P-201ENST00000581512 297 ntBASIC16.31■□□□□ 0.2
CIITAP33076 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC16.31■□□□□ 0.2
CIITAP33076 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC16.31■□□□□ 0.2
CIITAP33076 AL022334.2-201ENST00000610000 484 ntBASIC16.31■□□□□ 0.2
CIITAP33076 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC16.31■□□□□ 0.2
CIITAP33076 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CIITAP33076 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CIITAP33076 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC16.31■□□□□ 0.2
CIITAP33076 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CIITAP33076 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CIITAP33076 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CIITAP33076 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CIITAP33076 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.31■□□□□ 0.2
CIITAP33076 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC16.31■□□□□ 0.2
CIITAP33076 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC16.31■□□□□ 0.2
CIITAP33076 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CIITAP33076 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CIITAP33076 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CIITAP33076 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
CIITAP33076 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC16.31■□□□□ 0.2
CIITAP33076 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CIITAP33076 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CIITAP33076 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CIITAP33076 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC16.3■□□□□ 0.2
CIITAP33076 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CIITAP33076 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms