Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC14.88□□□□□ -0.03
COL9A1P20849 RNASEH2CP1-201ENST00000454281 502 ntBASIC14.88□□□□□ -0.03
COL9A1P20849 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC14.88□□□□□ -0.03
COL9A1P20849 MST1L-204ENST00000545160 559 ntTSL 4 BASIC14.88□□□□□ -0.03
COL9A1P20849 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.88□□□□□ -0.03
COL9A1P20849 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC14.88□□□□□ -0.03
COL9A1P20849 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC14.88□□□□□ -0.03
COL9A1P20849 AC007250.1-201ENST00000608934 338 ntBASIC14.88□□□□□ -0.03
COL9A1P20849 MKKS-203ENST00000609375 882 ntTSL 2 BASIC14.88□□□□□ -0.03
COL9A1P20849 AC020658.4-201ENST00000613987 684 ntBASIC14.88□□□□□ -0.03
COL9A1P20849 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL9A1P20849 TARM1-202ENST00000616041 1218 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
COL9A1P20849 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL9A1P20849 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
COL9A1P20849 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL9A1P20849 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.88□□□□□ -0.03
COL9A1P20849 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC14.88□□□□□ -0.03
COL9A1P20849 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL9A1P20849 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL9A1P20849 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL9A1P20849 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL9A1P20849 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC14.88□□□□□ -0.03
COL9A1P20849 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL9A1P20849 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
COL9A1P20849 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
COL9A1P20849 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL9A1P20849 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.87□□□□□ -0.03
COL9A1P20849 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL9A1P20849 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL9A1P20849 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL9A1P20849 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL9A1P20849 WASH3P-207ENST00000560956 1394 ntBASIC14.87□□□□□ -0.03
COL9A1P20849 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL9A1P20849 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL9A1P20849 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL9A1P20849 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
COL9A1P20849 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.87□□□□□ -0.03
COL9A1P20849 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL9A1P20849 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL9A1P20849 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
COL9A1P20849 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL9A1P20849 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL9A1P20849 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL9A1P20849 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL9A1P20849 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
COL9A1P20849 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
COL9A1P20849 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL9A1P20849 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL9A1P20849 TPRG1-AS2-201ENST00000425454 479 ntTSL 5 BASIC14.87□□□□□ -0.03
COL9A1P20849 CSNK1G2P1-201ENST00000442675 955 ntBASIC14.87□□□□□ -0.03
COL9A1P20849 PLA2G15-203ENST00000444212 943 ntTSL 2 BASIC14.87□□□□□ -0.03
COL9A1P20849 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL9A1P20849 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC14.87□□□□□ -0.03
COL9A1P20849 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC14.87□□□□□ -0.03
COL9A1P20849 AC097478.2-201ENST00000610572 514 ntBASIC14.87□□□□□ -0.03
COL9A1P20849 Z82244.2-201ENST00000632196 448 ntBASIC14.87□□□□□ -0.03
COL9A1P20849 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.87□□□□□ -0.03
COL9A1P20849 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL9A1P20849 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL9A1P20849 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.87□□□□□ -0.03
COL9A1P20849 PAUPAR-201ENST00000630360 2965 ntBASIC14.87□□□□□ -0.03
COL9A1P20849 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.87□□□□□ -0.03
COL9A1P20849 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.87□□□□□ -0.03
COL9A1P20849 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL9A1P20849 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL9A1P20849 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL9A1P20849 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL9A1P20849 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL9A1P20849 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL9A1P20849 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
COL9A1P20849 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
COL9A1P20849 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.86□□□□□ -0.03
COL9A1P20849 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL9A1P20849 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.86□□□□□ -0.03
COL9A1P20849 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL9A1P20849 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC14.86□□□□□ -0.03
COL9A1P20849 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL9A1P20849 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL9A1P20849 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL9A1P20849 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC14.86□□□□□ -0.03
COL9A1P20849 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL9A1P20849 TBCA-202ENST00000380377 683 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL9A1P20849 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL9A1P20849 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC14.86□□□□□ -0.03
COL9A1P20849 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC14.86□□□□□ -0.03
COL9A1P20849 AL121578.1-201ENST00000428051 892 ntBASIC14.86□□□□□ -0.03
COL9A1P20849 CYP4F29P-202ENST00000428301 1279 ntTSL 2 BASIC14.86□□□□□ -0.03
COL9A1P20849 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC14.86□□□□□ -0.03
COL9A1P20849 AC017099.1-201ENST00000448261 1028 ntBASIC14.86□□□□□ -0.03
COL9A1P20849 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC14.86□□□□□ -0.03
COL9A1P20849 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC14.86□□□□□ -0.03
COL9A1P20849 MIR2278-201ENST00000516344 96 ntBASIC14.86□□□□□ -0.03
COL9A1P20849 KCTD14-202ENST00000533144 904 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL9A1P20849 AP000944.1-201ENST00000533886 564 ntTSL 4 BASIC14.86□□□□□ -0.03
COL9A1P20849 KRT127P-201ENST00000547183 433 ntBASIC14.86□□□□□ -0.03
COL9A1P20849 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC14.86□□□□□ -0.03
COL9A1P20849 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL9A1P20849 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL9A1P20849 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL9A1P20849 AC005520.3-201ENST00000602874 370 ntBASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms