Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 AC095040.1-201ENST00000513286 675 ntBASIC19.12■□□□□ 0.65
CSB-PGBD3P0DP91 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC19.12■□□□□ 0.65
CSB-PGBD3P0DP91 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC19.12■□□□□ 0.65
CSB-PGBD3P0DP91 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC19.12■□□□□ 0.65
CSB-PGBD3P0DP91 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC19.12■□□□□ 0.65
CSB-PGBD3P0DP91 SKA2-205ENST00000580541 689 ntTSL 3 BASIC19.12■□□□□ 0.65
CSB-PGBD3P0DP91 AC055811.3-201ENST00000584952 686 ntBASIC19.12■□□□□ 0.65
CSB-PGBD3P0DP91 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC19.12■□□□□ 0.65
CSB-PGBD3P0DP91 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CSB-PGBD3P0DP91 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC19.12■□□□□ 0.65
CSB-PGBD3P0DP91 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC19.12■□□□□ 0.65
CSB-PGBD3P0DP91 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CSB-PGBD3P0DP91 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC19.12■□□□□ 0.65
CSB-PGBD3P0DP91 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CSB-PGBD3P0DP91 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CSB-PGBD3P0DP91 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CSB-PGBD3P0DP91 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC19.12■□□□□ 0.65
CSB-PGBD3P0DP91 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CSB-PGBD3P0DP91 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CSB-PGBD3P0DP91 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
CSB-PGBD3P0DP91 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 LAP3P2-201ENST00000454686 1454 ntBASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 PKD1P5-201ENST00000532415 10291 ntBASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 GNG10P1-201ENST00000452289 199 ntBASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 FAM86B3P-203ENST00000523992 854 ntBASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 AC012073.1-201ENST00000606114 1108 ntBASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 AC138035.3-201ENST00000622706 2791 ntBASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CSB-PGBD3P0DP91 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 LINC00528-201ENST00000600723 2160 ntBASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 AC025183.3-201ENST00000623526 1482 ntBASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 AC108734.2-201ENST00000420887 1069 ntBASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 HINT1-205ENST00000508488 703 ntTSL 2 BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 AL021707.6-201ENST00000609212 491 ntBASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 AL118522.1-201ENST00000611368 560 ntBASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 HMGB1P24-201ENST00000611897 328 ntBASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms