Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGB1P09429 AC017083.2-201ENST00000608069 979 ntBASIC17.2■□□□□ 0.34
HMGB1P09429 MIR6805-201ENST00000615055 62 ntBASIC17.2■□□□□ 0.34
HMGB1P09429 AL162426.1-201ENST00000624141 743 ntBASIC17.2■□□□□ 0.34
HMGB1P09429 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB1P09429 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
HMGB1P09429 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGB1P09429 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB1P09429 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC17.2■□□□□ 0.34
HMGB1P09429 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB1P09429 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB1P09429 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGB1P09429 AC015818.8-201ENST00000587907 1519 ntBASIC17.2■□□□□ 0.34
HMGB1P09429 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB1P09429 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGB1P09429 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
HMGB1P09429 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGB1P09429 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB1P09429 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB1P09429 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
HMGB1P09429 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
HMGB1P09429 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGB1P09429 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB1P09429 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGB1P09429 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
HMGB1P09429 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGB1P09429 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB1P09429 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB1P09429 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGB1P09429 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB1P09429 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGB1P09429 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB1P09429 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB1P09429 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB1P09429 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGB1P09429 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB1P09429 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB1P09429 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC17.19■□□□□ 0.34
HMGB1P09429 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC17.19■□□□□ 0.34
HMGB1P09429 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC17.19■□□□□ 0.34
HMGB1P09429 ST13P19-201ENST00000442505 1124 ntBASIC17.19■□□□□ 0.34
HMGB1P09429 KRT223P-202ENST00000449164 1292 ntBASIC17.19■□□□□ 0.34
HMGB1P09429 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGB1P09429 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC17.19■□□□□ 0.34
HMGB1P09429 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
HMGB1P09429 AC119751.2-201ENST00000504529 210 ntBASIC17.19■□□□□ 0.34
HMGB1P09429 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGB1P09429 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB1P09429 RNA5SP412-201ENST00000516234 123 ntBASIC17.19■□□□□ 0.34
HMGB1P09429 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGB1P09429 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGB1P09429 RNF41-210ENST00000552244 716 ntTSL 3 BASIC17.19■□□□□ 0.34
HMGB1P09429 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC17.19■□□□□ 0.34
HMGB1P09429 MIR4741-201ENST00000579822 90 ntBASIC17.19■□□□□ 0.34
HMGB1P09429 DRG2-220ENST00000583355 891 ntTSL 3 BASIC17.19■□□□□ 0.34
HMGB1P09429 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC17.19■□□□□ 0.34
HMGB1P09429 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
HMGB1P09429 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB1P09429 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC17.19■□□□□ 0.34
HMGB1P09429 Z98259.2-201ENST00000641583 609 ntBASIC17.19■□□□□ 0.34
HMGB1P09429 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB1P09429 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
HMGB1P09429 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
HMGB1P09429 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB1P09429 BANP-203ENST00000393207 2438 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGB1P09429 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB1P09429 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
HMGB1P09429 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB1P09429 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
HMGB1P09429 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC17.19■□□□□ 0.34
HMGB1P09429 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB1P09429 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGB1P09429 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB1P09429 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC17.18■□□□□ 0.34
HMGB1P09429 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB1P09429 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
HMGB1P09429 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
HMGB1P09429 AL022313.4-201ENST00000562756 2046 ntBASIC17.18■□□□□ 0.34
HMGB1P09429 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC17.18■□□□□ 0.34
HMGB1P09429 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB1P09429 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB1P09429 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGB1P09429 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB1P09429 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGB1P09429 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
HMGB1P09429 USP17L6P-201ENST00000382470 1197 ntBASIC17.18■□□□□ 0.34
HMGB1P09429 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
HMGB1P09429 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB1P09429 FAM21FP-201ENST00000426241 1131 ntBASIC17.18■□□□□ 0.34
HMGB1P09429 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB1P09429 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC17.18■□□□□ 0.34
HMGB1P09429 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC17.18■□□□□ 0.34
HMGB1P09429 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC17.18■□□□□ 0.34
HMGB1P09429 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC17.18■□□□□ 0.34
HMGB1P09429 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
HMGB1P09429 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB1P09429 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HMGB1P09429 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
HMGB1P09429 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC17.18■□□□□ 0.34
HMGB1P09429 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms