Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HIF3AQ9Y2N7 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 KRT8P28-201ENST00000433288 1390 ntBASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 CEP126-201ENST00000263468 7039 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 ZBTB12BP-201ENST00000314232 1122 ntBASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 FAM8A4P-201ENST00000435433 1213 ntBASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 AC098799.1-201ENST00000504752 800 ntBASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 SLC25A47P1-201ENST00000531577 414 ntBASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 OR10B1P-201ENST00000601666 907 ntBASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 AC002472.3-201ENST00000640124 621 ntBASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
HIF3AQ9Y2N7 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 GRAP-202ENST00000395635 834 ntTSL 2 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 AL590640.2-201ENST00000457038 527 ntBASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC13.21□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms