Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 STK40-201ENST00000359297 4837 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 Z93015.1-201ENST00000451718 390 ntBASIC14.26□□□□□ -0.13
VPS4AQ9UN37 VDAC1P7-201ENST00000462417 847 ntBASIC14.26□□□□□ -0.13
VPS4AQ9UN37 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 RERG-205ENST00000537647 935 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 AC124283.3-201ENST00000570869 594 ntBASIC14.26□□□□□ -0.13
VPS4AQ9UN37 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC14.26□□□□□ -0.13
VPS4AQ9UN37 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 CR383656.2-201ENST00000548656 2254 ntBASIC14.26□□□□□ -0.13
VPS4AQ9UN37 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
VPS4AQ9UN37 AC107918.4-201ENST00000641966 3141 ntBASIC14.26□□□□□ -0.13
VPS4AQ9UN37 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 CICP20-201ENST00000443330 2801 ntBASIC14.25□□□□□ -0.13
VPS4AQ9UN37 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 TPO-206ENST00000382269 1155 ntTSL 5 BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 BTBD6P1-201ENST00000412176 1267 ntBASIC14.25□□□□□ -0.13
VPS4AQ9UN37 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 NEU3-202ENST00000526068 431 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 KRT90P-201ENST00000549264 1064 ntBASIC14.25□□□□□ -0.13
VPS4AQ9UN37 AC120045.2-201ENST00000567334 178 ntBASIC14.25□□□□□ -0.13
VPS4AQ9UN37 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 AC244669.2-201ENST00000612320 853 ntBASIC14.25□□□□□ -0.13
VPS4AQ9UN37 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS4AQ9UN37 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
VPS4AQ9UN37 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms