Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 EMC4-209ENST00000559421 497 ntTSL 2 BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 AC005324.6-201ENST00000587972 613 ntBASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 AC009884.2-201ENST00000603110 324 ntBASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 MIR6720-201ENST00000611664 98 ntBASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 GRN-222ENST00000639447 1314 ntTSL 2 BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 AC018735.1-201ENST00000437208 1502 ntBASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
TRIM39Q9HCM9 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 AC005840.4-201ENST00000541242 2494 ntBASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 KHSRPP1-201ENST00000427983 1768 ntBASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 AC009093.10-201ENST00000641956 1442 ntBASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 RNMTL1P1-201ENST00000454103 560 ntBASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 AP001258.2-201ENST00000529891 490 ntBASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 BNIP3P13-201ENST00000599968 566 ntBASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 AC006504.5-208ENST00000588784 2401 ntBASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
TRIM39Q9HCM9 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM39Q9HCM9 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM39Q9HCM9 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM39Q9HCM9 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM39Q9HCM9 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM39Q9HCM9 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
TRIM39Q9HCM9 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM39Q9HCM9 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM39Q9HCM9 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM39Q9HCM9 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM39Q9HCM9 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM39Q9HCM9 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms