Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 AC006453.1-201ENST00000636037 1257 ntBASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC3Q9BQI4 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.27□□□□□ -0.12
CCDC3Q9BQI4 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC3Q9BQI4 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC3Q9BQI4 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC3Q9BQI4 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC3Q9BQI4 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC3Q9BQI4 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC14.27□□□□□ -0.12
CCDC3Q9BQI4 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.27□□□□□ -0.12
CCDC3Q9BQI4 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC3Q9BQI4 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC3Q9BQI4 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.27□□□□□ -0.12
CCDC3Q9BQI4 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC3Q9BQI4 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC3Q9BQI4 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.27□□□□□ -0.12
CCDC3Q9BQI4 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC3Q9BQI4 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC3Q9BQI4 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC3Q9BQI4 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.27□□□□□ -0.12
CCDC3Q9BQI4 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 AC078875.1-201ENST00000431907 724 ntBASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 POU5F1P2-201ENST00000521750 823 ntBASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 CCNC-217ENST00000523985 958 ntTSL 2 BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 MIR5572-201ENST00000583188 137 ntBASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 NAT9-224ENST00000583757 583 ntTSL 3 BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC3Q9BQI4 AJ011931.1-201ENST00000618749 2492 ntBASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 DKFZP434A062-201ENST00000573103 5021 ntBASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 AC239868.1-201ENST00000369385 493 ntBASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 AC069218.1-201ENST00000435269 762 ntBASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 AL157407.1-201ENST00000435784 904 ntBASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 AL035414.1-201ENST00000451327 857 ntBASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 GCOM2-201ENST00000509133 1104 ntBASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 NAT9-211ENST00000580632 799 ntTSL 3 BASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 MIR4754-201ENST00000582477 89 ntBASIC14.26□□□□□ -0.13
CCDC3Q9BQI4 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms