Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.23□□□□□ -0.13
PKP4Q99569 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.23□□□□□ -0.13
PKP4Q99569 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC14.23□□□□□ -0.13
PKP4Q99569 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
PKP4Q99569 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 AL354877.1-201ENST00000424412 413 ntBASIC14.23□□□□□ -0.13
PKP4Q99569 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC14.23□□□□□ -0.13
PKP4Q99569 AL645933.1-201ENST00000440087 609 ntBASIC14.23□□□□□ -0.13
PKP4Q99569 MTX1P1-201ENST00000440904 838 ntBASIC14.23□□□□□ -0.13
PKP4Q99569 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 Z93015.1-201ENST00000451718 390 ntBASIC14.23□□□□□ -0.13
PKP4Q99569 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
PKP4Q99569 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC14.23□□□□□ -0.13
PKP4Q99569 IGHVIII-5-2-201ENST00000522505 261 ntBASIC14.23□□□□□ -0.13
PKP4Q99569 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
PKP4Q99569 AC100827.2-201ENST00000563214 1194 ntBASIC14.23□□□□□ -0.13
PKP4Q99569 AL008721.1-201ENST00000609964 604 ntBASIC14.23□□□□□ -0.13
PKP4Q99569 MIR6720-201ENST00000611664 98 ntBASIC14.23□□□□□ -0.13
PKP4Q99569 AL162426.1-201ENST00000624141 743 ntBASIC14.23□□□□□ -0.13
PKP4Q99569 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
PKP4Q99569 TMBIM7P-202ENST00000641474 1516 ntBASIC14.23□□□□□ -0.13
PKP4Q99569 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
PKP4Q99569 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
PKP4Q99569 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
PKP4Q99569 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
PKP4Q99569 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC14.23□□□□□ -0.13
PKP4Q99569 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
PKP4Q99569 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.23□□□□□ -0.13
PKP4Q99569 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
PKP4Q99569 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.23□□□□□ -0.13
PKP4Q99569 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PKP4Q99569 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
PKP4Q99569 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PKP4Q99569 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PKP4Q99569 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PKP4Q99569 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PKP4Q99569 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.22□□□□□ -0.13
PKP4Q99569 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PKP4Q99569 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
PKP4Q99569 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PKP4Q99569 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
PKP4Q99569 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PKP4Q99569 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PKP4Q99569 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC14.22□□□□□ -0.13
PKP4Q99569 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
PKP4Q99569 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PKP4Q99569 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC14.22□□□□□ -0.13
PKP4Q99569 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
PKP4Q99569 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PKP4Q99569 NDUFAB1P1-201ENST00000404262 460 ntBASIC14.22□□□□□ -0.13
PKP4Q99569 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC14.22□□□□□ -0.13
PKP4Q99569 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC14.22□□□□□ -0.13
PKP4Q99569 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PKP4Q99569 AL157407.1-201ENST00000435784 904 ntBASIC14.22□□□□□ -0.13
PKP4Q99569 GOLGA2P4-201ENST00000441462 777 ntBASIC14.22□□□□□ -0.13
PKP4Q99569 HSPB1P2-201ENST00000448722 546 ntBASIC14.22□□□□□ -0.13
PKP4Q99569 FAM86HP-204ENST00000513466 959 ntBASIC14.22□□□□□ -0.13
PKP4Q99569 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC14.22□□□□□ -0.13
PKP4Q99569 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC14.22□□□□□ -0.13
PKP4Q99569 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PKP4Q99569 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC14.22□□□□□ -0.13
PKP4Q99569 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC14.22□□□□□ -0.13
PKP4Q99569 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PKP4Q99569 TECR-220ENST00000600083 1204 ntTSL 2 BASIC14.22□□□□□ -0.13
PKP4Q99569 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC14.22□□□□□ -0.13
PKP4Q99569 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PKP4Q99569 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
PKP4Q99569 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC14.22□□□□□ -0.13
PKP4Q99569 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PKP4Q99569 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PKP4Q99569 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PKP4Q99569 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PKP4Q99569 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PKP4Q99569 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC14.22□□□□□ -0.13
PKP4Q99569 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC14.22□□□□□ -0.13
PKP4Q99569 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
PKP4Q99569 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PKP4Q99569 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.22□□□□□ -0.13
PKP4Q99569 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms